Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- plastid 2
- cytosol 2
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDY16320 | Canola | cytosol, mitochondrion | 34.14 | 72.68 |
| Bra038885.1-P | Field mustard | nucleus | 50.61 | 65.72 |
| AT5G45990.2 | Thale cress | nucleus | 74.58 | 45.1 |
| AT5G41770.1 | Thale cress | nucleus | 76.27 | 44.68 |
| Zm00001d013548_P002 | Maize | mitochondrion | 59.32 | 40.56 |
| AT3G13210.1 | Thale cress | nucleus | 63.2 | 39.73 |
| CDY63724 | Canola | plastid | 62.23 | 39.36 |
| EES19533 | Sorghum | cytosol | 67.8 | 38.89 |
| TraesCS7A01G351600.1 | Wheat | nucleus | 67.55 | 38.8 |
| TraesCS7B01G276500.1 | Wheat | cytosol | 67.55 | 38.8 |
| TraesCS7D01G371400.1 | Wheat | cytosol | 67.55 | 38.8 |
| EER93674 | Sorghum | cytosol | 67.55 | 38.64 |
| Os05t0289400-01 | Rice | nucleus | 67.07 | 38.31 |
| Bra031930.1-P | Field mustard | cytosol | 61.02 | 37.78 |
| TraesCS5D01G284700.1 | Wheat | cytosol, mitochondrion | 62.23 | 36.93 |
| CDY31331 | Canola | cytosol, nucleus, plastid | 56.9 | 36.43 |
| Zm00001d033388_P001 | Maize | cytosol | 67.55 | 35.95 |
| HORVU7Hr1G089610.1 | Barley | nucleus, plastid | 67.55 | 35.18 |
| TraesCS5B01G277100.1 | Wheat | cytosol, mitochondrion | 46.97 | 34.34 |
| HORVU5Hr1G075030.1 | Barley | nucleus | 59.56 | 34.26 |
| Os06t0523900-00 | Rice | cytosol, plastid | 52.54 | 31.04 |
| Os10t0328700-01 | Rice | mitochondrion | 45.28 | 26.3 |
| GSMUA_Achr5P12800_001 | Banana | nucleus | 8.96 | 18.5 |
Protein Annotations
| Gene3D:1.25.40.10 | MapMan:16.4.5.2.6 | EntrezGene:824275 | ProteinID:AEE78752.1 | ArrayExpress:AT3G51110 | EnsemblPlantsGene:AT3G51110 |
| RefSeq:AT3G51110 | TAIR:AT3G51110 | RefSeq:AT3G51110-TAIR-G | EnsemblPlants:AT3G51110.1 | TAIR:AT3G51110.1 | Unigene:At.857 |
| UniProt:F4J390 | GO:GO:0000245 | GO:GO:0000974 | GO:GO:0003674 | GO:GO:0005488 | GO:GO:0005515 |
| GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 | GO:GO:0005634 | GO:GO:0006139 | GO:GO:0006396 |
| GO:GO:0008150 | GO:GO:0008152 | GO:GO:0009987 | GO:GO:0016043 | GO:GO:0071010 | GO:GO:0071011 |
| GO:GO:0071012 | GO:GO:0071013 | GO:GO:0071014 | InterPro:HAT | InterPro:IPR011990 | InterPro:IPR013026 |
| RefSeq:NP_566944.1 | PFAM:PF02184 | PO:PO:0000013 | PO:PO:0000037 | PO:PO:0000230 | PO:PO:0000293 |
| PO:PO:0001054 | PO:PO:0001078 | PO:PO:0001081 | PO:PO:0001185 | PO:PO:0004507 | PO:PO:0007095 |
| PO:PO:0007098 | PO:PO:0007103 | PO:PO:0007115 | PO:PO:0007123 | PO:PO:0007611 | PO:PO:0007616 |
| PO:PO:0008019 | PO:PO:0009005 | PO:PO:0009009 | PO:PO:0009010 | PO:PO:0009025 | PO:PO:0009029 |
| PO:PO:0009030 | PO:PO:0009031 | PO:PO:0009032 | PO:PO:0009046 | PO:PO:0009047 | PO:PO:0009052 |
| PO:PO:0020030 | PO:PO:0020038 | PO:PO:0020100 | PO:PO:0020137 | PO:PO:0025022 | PO:PO:0025281 |
| PFscan:PS50293 | PANTHER:PTHR11246 | PANTHER:PTHR11246:SF3 | SMART:SM00386 | SUPFAM:SSF48452 | InterPro:TPR-contain_dom |
| InterPro:TPR-like_helical_dom_sf | UniParc:UPI00001636FA | : | : | : | : |
Description
Tetratricopeptide repeat (TPR)-like superfamily protein [Source:UniProtKB/TrEMBL;Acc:F4J390]
Coordinates
chr3:+:18983626..18985869
Molecular Weight (calculated)
50111.8 Da
IEP (calculated)
6.545
GRAVY (calculated)
-0.687
Length
413 amino acids
Sequence
(BLAST)
(BLAST)
001: MMMIPRMVKN KTPAPVQITA EQVLKEARER EDSRILRPPK QKITDSDELA EYRLRRRKEF EDQIRGAKTN SQVWVRYADW EESQKDHDRA RSVWERALED
101: ESYRNHTLWL KYAEFEMRNK SVNHARNVWD RAVKILPRVD QFWYKYIHME EILGNIDGAR KIFERWMDWS PDQQAWLCFI KFELRYNEIE RSRSIYERFV
201: LCHPKASSFI RYAKFEMKNS QVSLARIVYE RAIEMLKDVE EEAEMIFVAF AEFEELCKEV ERARFLYKYA LDHIPKGRAE DLYKKFVAFE KQYGNKEGID
301: DAIVGRRKLQ YEGEVRKNPL NYDSWFDYIS LEETLGDKDR IREVYERAIA NVPLAEEKRY WQRYIYLWID YALFEEILAE DVERTRAVYR ECLNLIPSLQ
401: ILFCQDMVAR CTV
101: ESYRNHTLWL KYAEFEMRNK SVNHARNVWD RAVKILPRVD QFWYKYIHME EILGNIDGAR KIFERWMDWS PDQQAWLCFI KFELRYNEIE RSRSIYERFV
201: LCHPKASSFI RYAKFEMKNS QVSLARIVYE RAIEMLKDVE EEAEMIFVAF AEFEELCKEV ERARFLYKYA LDHIPKGRAE DLYKKFVAFE KQYGNKEGID
301: DAIVGRRKLQ YEGEVRKNPL NYDSWFDYIS LEETLGDKDR IREVYERAIA NVPLAEEKRY WQRYIYLWID YALFEEILAE DVERTRAVYR ECLNLIPSLQ
401: ILFCQDMVAR CTV
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.