Factsheet for Os05t0289400-01

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

plastid 2
nucleus 3
cytosol 2
mitochondrion 1

Predictors

GFP

MS/MS

Papers

nucleus: 19621931

msms PMID: 19621931 doi

T Aki, S Yanagisawa

Department of Applied Biological Chemistry, The University of Tokyo, Japan.

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
EER93674	Sorghum	cytosol	92.12	92.24
EES19533	Sorghum	cytosol	91.84	92.22
TraesCS7D01G371400.1	Wheat	cytosol	88.38	88.87
TraesCS7B01G276500.1	Wheat	cytosol	88.24	88.73
TraesCS7A01G351600.1	Wheat	nucleus	87.83	88.32
Zm00001d013548_P002	Maize	mitochondrion	73.17	87.58
Zm00001d033388_P001	Maize	cytosol	91.84	85.57
TraesCS5B01G277100.1	Wheat	cytosol, mitochondrion	64.18	82.12
HORVU7Hr1G089610.1	Barley	nucleus, plastid	88.24	80.45
TraesCS5D01G284700.1	Wheat	cytosol, mitochondrion	77.32	80.32
Os06t0523900-00	Rice	cytosol, plastid	76.35	78.97
GSMUA_Achr1P00740_001	Banana	cytosol	62.1	76.23
HORVU5Hr1G075030.1	Barley	nucleus	75.38	75.91
KRH27855	Soybean	nucleus	70.4	73.24
KRH77629	Soybean	nucleus	70.4	73.24
VIT_02s0025g01160.t01	Wine grape	cytosol	71.09	73.12
Solyc12g056080.1.1	Tomato	nucleus	68.88	71.86
PGSC0003DMT400012873	Potato	cytosol	68.88	71.86
CDX67505	Canola	nucleus	65.7	71.21
CDY35016	Canola	nucleus	66.94	71.07
CDY27682	Canola	nucleus	65.56	71.06
CDY49876	Canola	nucleus	65.56	71.06
Bra028504.1-P	Field mustard	nucleus	69.29	70.96
Bra025462.1-P	Field mustard	nucleus	69.29	70.96
AT5G41770.1	Thale cress	nucleus	68.74	70.5
AT5G45990.2	Thale cress	nucleus	66.39	70.28
PGSC0003DMT400024585	Potato	cytosol	58.09	68.18
Solyc03g007560.2.1	Tomato	cytosol, mitochondrion	62.38	67.92
PGSC0003DMT400072653	Potato	cytosol, mitochondrion, nucleus, plastid	62.24	67.57
AT3G51110.1	Thale cress	cytosol	38.31	67.07
Solyc03g007850.1.1	Tomato	mitochondrion	62.38	67.01
CDX89268	Canola	cytosol	11.62	66.67
CDY16320	Canola	cytosol, mitochondrion	17.84	66.49
AT3G13210.1	Thale cress	nucleus	59.89	65.91
Bra038885.1-P	Field mustard	nucleus	28.49	64.78
CDX94039	Canola	nucleus	57.26	64.59
CDY38549	Canola	extracellular	7.19	64.2
CDY51192	Canola	cytosol	12.86	64.14
Bra031930.1-P	Field mustard	cytosol	58.78	63.72
CDY63724	Canola	plastid	57.54	63.71
CDY49874	Canola	mitochondrion	12.59	63.64
CDY31331	Canola	cytosol, nucleus, plastid	56.57	63.41
CDY16319	Canola	nucleus	7.19	59.77
CDX98687	Canola	endoplasmic reticulum, nucleus, plastid	34.16	58.12
PGSC0003DMT400015907	Potato	cytosol	14.25	56.91
PGSC0003DMT400016837	Potato	mitochondrion	20.19	56.15
Solyc10g050500.1.1	Tomato	cytosol	5.12	53.62
CDY14715	Canola	cytosol	13.69	46.92
Os10t0328700-01	Rice	mitochondrion	45.37	46.13
Bra023285.1-P	Field mustard	mitochondrion	9.41	41.46
PGSC0003DMT400041076	Potato	nucleus	11.06	39.22
CDX93820	Canola	cytosol	9.96	38.5

Protein Annotations

Gene3D:1.25.40.10	MapMan:16.4.5.2.6	EntrezGene:4338298	ProteinID:AAT01404.1	EMBL:AK100478	ProteinID:BAF17011.1
ProteinID:BAH47700.1	ProteinID:BAS93158.1	GO:GO:0000245	GO:GO:0000974	GO:GO:0003674	GO:GO:0005488
GO:GO:0005515	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005634	GO:GO:0006139
GO:GO:0006396	GO:GO:0008150	GO:GO:0008152	GO:GO:0009987	GO:GO:0016043	GO:GO:0071010
GO:GO:0071011	GO:GO:0071012	GO:GO:0071013	GO:GO:0071014	InterPro:HAT	InterPro:IPR011990
InterPro:IPR013026	EnsemblPlantsGene:Os05g0289400	EnsemblPlants:Os05t0289400-01	PFAM:PF02184	PFscan:PS50293	PANTHER:PTHR11246
PANTHER:PTHR11246:SF3	UniProt:Q75HS3	SMART:SM00386	SUPFAM:SSF48452	InterPro:TPR-contain_dom	InterPro:TPR-like_helical_dom_sf
UniParc:UPI000035ACD4	RefSeq:XP_015640151.1	SEG:seg	:	:	:

Description

Similar to CRN (Crooked neck) protein. (Os05t0289400-01);Hypothetical conserved gene. (Os05t0289400-02)

Coordinates

chr5:-:12601169..12606114

Molecular Weight (calculated)

86127.0 Da

IEP (calculated)

7.539

GRAVY (calculated)

-0.766

Length

723 amino acids

Sequence
(BLAST)

001: MALITPASGG GGGGGDKAPP SASDPSLGFL TKRDTEVKLP RATRVKNKTP ASVQITAEQI LREARERQEP EIRPPKQKIT DSIELSEYRL RRRKEFEDVI
101: RRVRWNVNAW VKYAKWEEQQ RDFARARSVY ERALDVAHRD HTLWLKYAEF EMRNRFVNHA RNVWDRAVSL LPRVDQLWYK YIHMEELLGA VANARQVFER
201: WMAWRPDTAG WNSYIKFELR YGEVERARAI YERFVAEHPR PDTFIRYAKF EMKRGEVERA RQVYQRAADL LADDEDAQVL FVAFAEFEER CREVERARAI
301: YKYALDRVPK GQAEELYRKF LAFEKQFGDR EGIEDAIVGK RRFQYEDEVR KNPLNYDSWF DYIRLEESVG NNDRIREVYE RAIANIPPAD EKRYWQRYIY
401: LWINYALYEE LDAKDVERTR EVYSECLKLV PHKKFTFAKM WLMAAQFEIR QRNLKAARQI LGNAIGMSPK GKIFKKYIEI ELYLGNFDRC RTLYEKYIEW
501: SPANCYAWRK YAELEKNLSE TDRARSIYEL AIAQPALDTP EVLWKEYLQF EIDENEFDRT RELYERLLDR TKHLKVWISY TEFEASAGLA GEDGESEEIK
601: KEVSYHEQQI ERVRRCRAIF ERAFEYFRTS APELKEERAM LLEEWLNKEV SFGDLGDVTL VQKKAPRKVK RKRPIPTEDG STVAYEEYID YIFPDEVALA
701: PNLKILEAAY KWKKQKTDDT DDV

Best Arabidopsis Sequence Match ( AT5G41770.1 )
(BLAST)

001: MASGGKDSDR TLGYMTRKDT EVKLPRPTRV KNKTPAPIQI TAEQILREAR ERQEAEIRPP KQKITDSTEL SDYRLRRRKE FEDQIRRARW NIQVWVKYAQ
101: WEESQKDYAR ARSVWERAIE GDYRNHTLWL KYAEFEMKNK FVNSARNVWD RAVTLLPRVD QLWYKYIHME EILGNIAGAR QIFERWMDWS PDQQGWLSFI
201: KFELRYNEIE RARTIYERFV LCHPKVSAYI RYAKFEMKGG EVARCRSVYE RATEKLADDE EAEILFVAFA EFEERCKEVE RARFIYKFAL DHIPKGRAED
301: LYRKFVAFEK QYGDKEGIED AIVGKRRFQY EDEVRKSPSN YDSWFDYVRL EESVGNKDRI REIYERAIAN VPPAEEKRYW QRYIYLWINY ALFEEIETED
401: IERTRDVYRE CLKLIPHSKF SFAKIWLLAA QFEIRQLNLT GARQILGNAI GKAPKDKIFK KYIEIELQLG NMDRCRKLYE RYLEWSPENC YAWSKYAELE
501: RSLVETERAR AIFELAISQP ALDMPELLWK AYIDFEISEG ELERTRALYE RLLDRTKHYK VWVSFAKFEA SAAELEEDEN EDEDQEEDVI EHKKDCIKRA
601: RAIFDRANTY YKDSTPELKE ERATLLEDWL NMESSFGNLG DVSIVQSKLP KKLKKRKAIT REDGSTEYEE YIDYLYPEES QTTNLKILEA AYKWKKQKVA
701: ASEDD

Arabidopsis Description

Crooked neck protein, putative / cell cycle protein [Source:UniProtKB/TrEMBL;Acc:F4JZX8]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.