Factsheet for Bra023285.1-P

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion

Predictor Summary:

plastid 3
mitochondrion 6
peroxisome 1
plasma membrane 1
nucleus 1
cytosol 2

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDX93820	Canola	cytosol	89.63	78.61
Bra038885.1-P	Field mustard	nucleus	32.32	16.67
PGSC0003DMT400016837	Potato	mitochondrion	18.29	11.54
Zm00001d013548_P002	Maize	mitochondrion	41.46	11.26
Bra028504.1-P	Field mustard	nucleus	45.73	10.62
KRH27855	Soybean	nucleus	44.51	10.5
KRH77629	Soybean	nucleus	44.51	10.5
Bra025462.1-P	Field mustard	nucleus	45.12	10.48
Solyc12g056080.1.1	Tomato	nucleus	42.68	10.1
PGSC0003DMT400012873	Potato	cytosol	42.68	10.1
VIT_02s0025g01160.t01	Wine grape	cytosol	43.29	10.1
PGSC0003DMT400024585	Potato	cytosol	37.8	10.06
TraesCS5B01G277100.1	Wheat	cytosol, mitochondrion	34.15	9.91
TraesCS7A01G351600.1	Wheat	nucleus	42.68	9.74
TraesCS7D01G371400.1	Wheat	cytosol	42.68	9.74
TraesCS7B01G276500.1	Wheat	cytosol	42.68	9.74
EES19533	Sorghum	cytosol	42.07	9.58
EER93674	Sorghum	cytosol	42.07	9.56
Solyc03g007850.1.1	Tomato	mitochondrion	39.02	9.51
Solyc03g007560.2.1	Tomato	cytosol, mitochondrion	38.41	9.49
Os06t0523900-00	Rice	cytosol, plastid	40.24	9.44
Os05t0289400-01	Rice	nucleus	41.46	9.41
TraesCS5D01G284700.1	Wheat	cytosol, mitochondrion	39.63	9.34
PGSC0003DMT400072653	Potato	cytosol, mitochondrion, nucleus, plastid	37.8	9.31
Bra031930.1-P	Field mustard	cytosol	37.2	9.15
HORVU5Hr1G075030.1	Barley	nucleus	39.63	9.05
Zm00001d033388_P001	Maize	cytosol	42.07	8.89
HORVU7Hr1G089610.1	Barley	nucleus, plastid	42.68	8.83
PGSC0003DMT400015907	Potato	cytosol	9.15	8.29
Solyc10g050500.1.1	Tomato	cytosol	3.05	7.25
GSMUA_Achr5P12800_001	Banana	nucleus	7.93	6.5
Os10t0328700-01	Rice	mitochondrion	27.44	6.33
PGSC0003DMT400041076	Potato	nucleus	2.44	1.96

Protein Annotations

EnsemblPlants:Bra023285.1	EnsemblPlants:Bra023285.1-P	EnsemblPlantsGene:Bra023285	GO:GO:0003674	GO:GO:0005488	GO:GO:0005515
InterPro:IPR011990	InterPro:TPR-like_helical_dom_sf	PANTHER:PTHR11246	PANTHER:PTHR11246:SF3	SEG:seg	SUPFAM:SSF48452
UniParc:UPI000254226C	UniProt:M4E3D4	MapMan:35.2	:	:	:

Description

AT5G45990 (E=7e-019) | crooked neck protein, putative / cell cycle protein, putative

Coordinates

chrA09:-:19937998..19938624

Molecular Weight (calculated)

18907.9 Da

IEP (calculated)

4.907

GRAVY (calculated)

-0.511

Length

164 amino acids

Sequence
(BLAST)

001: MYLTRAVRAR YGGFGPFHKA TGLESFISAV AFSATNDAND AFSVVVSLSL LEPPPTQAVE FLHFSDSSSS FFKHWPVPES PSWSEHLTSR YMYKRATKKL
101: TDYEEAEMLF VAFTEAEDLY KKFVAFEKQY GDKEEIEDAT AGKRRFPYED EVRKNTLNYD SWFD

Best Arabidopsis Sequence Match ( AT3G51110.1 )
(BLAST)

001: MMMIPRMVKN KTPAPVQITA EQVLKEARER EDSRILRPPK QKITDSDELA EYRLRRRKEF EDQIRGAKTN SQVWVRYADW EESQKDHDRA RSVWERALED
101: ESYRNHTLWL KYAEFEMRNK SVNHARNVWD RAVKILPRVD QFWYKYIHME EILGNIDGAR KIFERWMDWS PDQQAWLCFI KFELRYNEIE RSRSIYERFV
201: LCHPKASSFI RYAKFEMKNS QVSLARIVYE RAIEMLKDVE EEAEMIFVAF AEFEELCKEV ERARFLYKYA LDHIPKGRAE DLYKKFVAFE KQYGNKEGID
301: DAIVGRRKLQ YEGEVRKNPL NYDSWFDYIS LEETLGDKDR IREVYERAIA NVPLAEEKRY WQRYIYLWID YALFEEILAE DVERTRAVYR ECLNLIPSLQ
401: ILFCQDMVAR CTV

Arabidopsis Description

Tetratricopeptide repeat (TPR)-like superfamily protein [Source:UniProtKB/TrEMBL;Acc:F4J390]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.