Subcellular Localization
min:
: max
Winner_takes_all: mitochondrion, plastid, nucleus, cytosol
Predictor Summary:
Predictor Summary:
- plastid 2
- nucleus 3
- mitochondrion 2
- cytosol 1
| Predictors | GFP | MS/MS | Papers |
|---|---|---|---|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| PGSC0003DMT400024585 | Potato | cytosol | 82.73 | 89.45 |
| PGSC0003DMT400012873 | Potato | cytosol | 88.89 | 85.43 |
| PGSC0003DMT400016837 | Potato | mitochondrion | 32.13 | 82.31 |
| KRH27855 | Soybean | nucleus | 80.18 | 76.83 |
| KRH77629 | Soybean | nucleus | 80.18 | 76.83 |
| VIT_02s0025g01160.t01 | Wine grape | cytosol | 80.63 | 76.39 |
| PGSC0003DMT400015907 | Potato | cytosol | 18.47 | 67.96 |
| EES19533 | Sorghum | cytosol | 69.67 | 64.44 |
| EER93674 | Sorghum | cytosol | 69.82 | 64.4 |
| TraesCS7A01G351600.1 | Wheat | nucleus | 68.32 | 63.28 |
| TraesCS7B01G276500.1 | Wheat | cytosol | 68.32 | 63.28 |
| TraesCS7D01G371400.1 | Wheat | cytosol | 68.32 | 63.28 |
| Zm00001d013548_P002 | Maize | mitochondrion | 57.06 | 62.91 |
| Os05t0289400-01 | Rice | nucleus | 67.57 | 62.24 |
| TraesCS5B01G277100.1 | Wheat | cytosol, mitochondrion | 52.1 | 61.42 |
| TraesCS5D01G284700.1 | Wheat | cytosol, mitochondrion | 62.91 | 60.2 |
| Zm00001d033388_P001 | Maize | cytosol | 69.82 | 59.92 |
| PGSC0003DMT400041076 | Potato | nucleus | 17.87 | 58.33 |
| HORVU7Hr1G089610.1 | Barley | nucleus, plastid | 68.17 | 57.25 |
| HORVU5Hr1G075030.1 | Barley | nucleus | 61.56 | 57.1 |
| Os06t0523900-00 | Rice | cytosol, plastid | 55.86 | 53.22 |
| Os10t0328700-01 | Rice | mitochondrion | 41.74 | 39.1 |
| Bra023285.1-P | Field mustard | mitochondrion | 9.31 | 37.8 |
| GSMUA_Achr5P12800_001 | Banana | nucleus | 5.26 | 17.5 |
Protein Annotations
| Gene3D:1.25.40.10 | MapMan:16.4.5.2.6 | GO:GO:0003674 | GO:GO:0005488 | GO:GO:0005515 | GO:GO:0006139 |
| GO:GO:0006396 | GO:GO:0008150 | GO:GO:0008152 | GO:GO:0009987 | InterPro:HAT | InterPro:IPR011990 |
| UniProt:M1CQQ6 | PFAM:PF02184 | EnsemblPlantsGene:PGSC0003DMG400028270 | PGSC:PGSC0003DMG400028270 | EnsemblPlants:PGSC0003DMT400072653 | PANTHER:PTHR11246 |
| PANTHER:PTHR11246:SF3 | SMART:SM00386 | SUPFAM:SSF48452 | InterPro:TPR-like_helical_dom_sf | UniParc:UPI0002955540 | SEG:seg |
Description
Crooked neck protein [Source:PGSC_GENE;Acc:PGSC0003DMG400028270]
Coordinates
chr10:+:55446625..55448625
Molecular Weight (calculated)
80141.8 Da
IEP (calculated)
7.262
GRAVY (calculated)
-0.715
Length
666 amino acids
Sequence
(BLAST)
(BLAST)
001: MRVKNKTPAP IQITAEQIFR EARERQEAEI RLPKQKISDP TEGADYRLRK RKEFEGLISR VGWNKSVWVK YAEWEESQKD LKRARSIWER ALGVDALNRD
101: HTIWLKYVDM EMKNKFVNHA RNLWDRAVIR LPRVDQLWYK YIHMEEMLGN VAGARQIFER WMRWMPDQQG WLSYIKFELR YNEIERAREI FERFVECHPK
201: VSAWIRFSKF EMKNGEIGRA RNCYERAVDK LGDDDDEAEQ LFLAFAEFED KCKETDRARC IYKFALDQIP KGRAEDLYGK FVAFEKQYGD REGIEDAIVG
301: KRRFQYEDQV KMNPRNYDTW FDYIRLEESI GNKERIREVY ERAIANVPPA EEKRYWQRYI YLWINYALYE EIDAQDMERT RHVYLECLKL IPHHKFSFAK
401: IWLLAALFEI RQLRLKEARL LLGEAIGRAP KDKIFNKYIE IELQFGNIDR CRKLYEKYLE WSPENCHAWS KFAGLERSLY ETERARAVFE LAIDQPALDI
501: PELLWKAYID FEISEGEFER TRALYERLLN RTKHLKVWIS YAKFEASAME SDVEQKKKCL QNARDVFERT VSYLRISAPE LKEERGMLLE EWLNMENSFG
601: ELGDVNLVHA KLPKKLTKRR QIDMEDGPAV YEEYIDYLFP EEMQANNLNI LASAYKWKKQ RVASED
101: HTIWLKYVDM EMKNKFVNHA RNLWDRAVIR LPRVDQLWYK YIHMEEMLGN VAGARQIFER WMRWMPDQQG WLSYIKFELR YNEIERAREI FERFVECHPK
201: VSAWIRFSKF EMKNGEIGRA RNCYERAVDK LGDDDDEAEQ LFLAFAEFED KCKETDRARC IYKFALDQIP KGRAEDLYGK FVAFEKQYGD REGIEDAIVG
301: KRRFQYEDQV KMNPRNYDTW FDYIRLEESI GNKERIREVY ERAIANVPPA EEKRYWQRYI YLWINYALYE EIDAQDMERT RHVYLECLKL IPHHKFSFAK
401: IWLLAALFEI RQLRLKEARL LLGEAIGRAP KDKIFNKYIE IELQFGNIDR CRKLYEKYLE WSPENCHAWS KFAGLERSLY ETERARAVFE LAIDQPALDI
501: PELLWKAYID FEISEGEFER TRALYERLLN RTKHLKVWIS YAKFEASAME SDVEQKKKCL QNARDVFERT VSYLRISAPE LKEERGMLLE EWLNMENSFG
601: ELGDVNLVHA KLPKKLTKRR QIDMEDGPAV YEEYIDYLFP EEMQANNLNI LASAYKWKKQ RVASED
001: MASGGKDSDR TLGYMTRKDT EVKLPRPTRV KNKTPAPIQI TAEQILREAR ERQEAEIRPP KQKITDSTEL SDYRLRRRKE FEDQIRRARW NIQVWVKYAQ
101: WEESQKDYAR ARSVWERAIE GDYRNHTLWL KYAEFEMKNK FVNSARNVWD RAVTLLPRVD QLWYKYIHME EILGNIAGAR QIFERWMDWS PDQQGWLSFI
201: KFELRYNEIE RARTIYERFV LCHPKVSAYI RYAKFEMKGG EVARCRSVYE RATEKLADDE EAEILFVAFA EFEERCKEVE RARFIYKFAL DHIPKGRAED
301: LYRKFVAFEK QYGDKEGIED AIVGKRRFQY EDEVRKSPSN YDSWFDYVRL EESVGNKDRI REIYERAIAN VPPAEEKRYW QRYIYLWINY ALFEEIETED
401: IERTRDVYRE CLKLIPHSKF SFAKIWLLAA QFEIRQLNLT GARQILGNAI GKAPKDKIFK KYIEIELQLG NMDRCRKLYE RYLEWSPENC YAWSKYAELE
501: RSLVETERAR AIFELAISQP ALDMPELLWK AYIDFEISEG ELERTRALYE RLLDRTKHYK VWVSFAKFEA SAAELEEDEN EDEDQEEDVI EHKKDCIKRA
601: RAIFDRANTY YKDSTPELKE ERATLLEDWL NMESSFGNLG DVSIVQSKLP KKLKKRKAIT REDGSTEYEE YIDYLYPEES QTTNLKILEA AYKWKKQKVA
701: ASEDD
101: WEESQKDYAR ARSVWERAIE GDYRNHTLWL KYAEFEMKNK FVNSARNVWD RAVTLLPRVD QLWYKYIHME EILGNIAGAR QIFERWMDWS PDQQGWLSFI
201: KFELRYNEIE RARTIYERFV LCHPKVSAYI RYAKFEMKGG EVARCRSVYE RATEKLADDE EAEILFVAFA EFEERCKEVE RARFIYKFAL DHIPKGRAED
301: LYRKFVAFEK QYGDKEGIED AIVGKRRFQY EDEVRKSPSN YDSWFDYVRL EESVGNKDRI REIYERAIAN VPPAEEKRYW QRYIYLWINY ALFEEIETED
401: IERTRDVYRE CLKLIPHSKF SFAKIWLLAA QFEIRQLNLT GARQILGNAI GKAPKDKIFK KYIEIELQLG NMDRCRKLYE RYLEWSPENC YAWSKYAELE
501: RSLVETERAR AIFELAISQP ALDMPELLWK AYIDFEISEG ELERTRALYE RLLDRTKHYK VWVSFAKFEA SAAELEEDEN EDEDQEEDVI EHKKDCIKRA
601: RAIFDRANTY YKDSTPELKE ERATLLEDWL NMESSFGNLG DVSIVQSKLP KKLKKRKAIT REDGSTEYEE YIDYLYPEES QTTNLKILEA AYKWKKQKVA
701: ASEDD
Arabidopsis Description
Crooked neck protein, putative / cell cycle protein [Source:UniProtKB/TrEMBL;Acc:F4JZX8]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.