Factsheet for VIT_02s0025g01160.t01

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 4
cytosol 2
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, mitochondrion, nucleus
BaCelLo:	nucleus
EpiLoc:	nucleus
MultiLoc:	cytosol
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH77629	Soybean	nucleus	85.21	86.19
KRH27855	Soybean	nucleus	85.21	86.19
PGSC0003DMT400012873	Potato	cytosol	84.92	86.15
Solyc12g056080.1.1	Tomato	nucleus	84.92	86.15
PGSC0003DMT400024585	Potato	cytosol	70.7	80.68
PGSC0003DMT400072653	Potato	cytosol, mitochondrion, nucleus, plastid	76.39	80.63
Solyc03g007850.1.1	Tomato	mitochondrion	75.96	79.35
Solyc03g007560.2.1	Tomato	cytosol, mitochondrion	73.54	77.86
CDX89268	Canola	cytosol	13.51	75.4
EER93674	Sorghum	cytosol	74.54	72.58
EES19533	Sorghum	cytosol	74.25	72.5
PGSC0003DMT400016837	Potato	mitochondrion	26.6	71.92
TraesCS7D01G371400.1	Wheat	cytosol	73.4	71.77
TraesCS7B01G276500.1	Wheat	cytosol	73.26	71.63
TraesCS7A01G351600.1	Wheat	nucleus	73.12	71.49
Os05t0289400-01	Rice	nucleus	73.12	71.09
Zm00001d013548_P002	Maize	mitochondrion	59.03	68.71
Zm00001d033388_P001	Maize	cytosol	74.96	67.91
PGSC0003DMT400015907	Potato	cytosol	17.35	67.4
TraesCS5B01G277100.1	Wheat	cytosol, mitochondrion	53.49	66.55
TraesCS5D01G284700.1	Wheat	cytosol, mitochondrion	65.29	65.95
HORVU7Hr1G089610.1	Barley	nucleus, plastid	72.97	64.69
Solyc10g050500.1.1	Tomato	cytosol	6.12	62.32
HORVU5Hr1G075030.1	Barley	nucleus	63.3	61.98
Os06t0523900-00	Rice	cytosol, plastid	59.89	60.23
CDY16319	Canola	nucleus	7.4	59.77
PGSC0003DMT400041076	Potato	nucleus	14.51	50.0
CDY14715	Canola	cytosol	14.65	48.82
Bra023285.1-P	Field mustard	mitochondrion	10.1	43.29
Os10t0328700-01	Rice	mitochondrion	41.25	40.79
CDX93820	Canola	cytosol	10.67	40.11
GSMUA_Achr5P12800_001	Banana	nucleus	6.12	21.5

Protein Annotations

Gene3D:1.25.40.10	EntrezGene:100255371	wikigene:100255371	MapMan:16.4.5.2.6	UniProt:A5BWC0	EMBL:AM473521
ProteinID:CAN81550	ProteinID:CAN81550.1	ProteinID:CCB58237	ProteinID:CCB58237.1	EMBL:FN596251	GO:GO:0000245
GO:GO:0000974	GO:GO:0003674	GO:GO:0005488	GO:GO:0005515	GO:GO:0005575	GO:GO:0005622
GO:GO:0005623	GO:GO:0005634	GO:GO:0006139	GO:GO:0006396	GO:GO:0008150	GO:GO:0008152
GO:GO:0009987	GO:GO:0016043	GO:GO:0071010	GO:GO:0071011	GO:GO:0071012	GO:GO:0071013
GO:GO:0071014	InterPro:HAT	InterPro:IPR011990	InterPro:IPR013026	EntrezGene:LOC100255371	wikigene:LOC100255371
PFAM:PF02184	PFscan:PS50293	PANTHER:PTHR11246	PANTHER:PTHR11246:SF3	SMART:SM00386	SUPFAM:SSF48452
TIGR:TC62018	TIGR:TC62604	TIGR:TC68482	InterPro:TPR-contain_dom	InterPro:TPR-like_helical_dom_sf	UniParc:UPI0001524857
ArrayExpress:VIT_02s0025g01160	EnsemblPlantsGene:VIT_02s0025g01160	EnsemblPlants:VIT_02s0025g01160.t01	unigene:Vvi.13803	RefSeq:XP_002273571	RefSeq:XP_002273571.1
SEG:seg	:	:	:	:	:

Description

No Description!

Coordinates

chr2:+:1105166..1112816

Molecular Weight (calculated)

84435.4 Da

IEP (calculated)

6.293

GRAVY (calculated)

-0.803

Length

703 amino acids

Sequence
(BLAST)

001: MATKDSDPSL GFLTKKETEV KLPRPTRVKN KTPAPIQITA EQILREARER QEAEIRPPKQ KITDSTELAD YRLRKRKEFE DLIRRVRWNI SVWIKYAQWE
101: ESQKDFNRAR SVWERALEVD YRNHTLWLKY AEVEMKNKFI NHARNVWDRA VTLLPRVDQL WYKYIHMEEM LGNVAGARQI FERWMTWMPD QQGWLSYIKF
201: EIRYNEMERA RGIFERFVQC HPKVGAWIRY AKFEMKNGEV ARARNCYERA IEKLADDEDA EQLFLAFAEF EERCKESERA RCIYKFALDH IPKGRAEDLY
301: RKFVAFEKQY GDKEGIEDAI VGKRRFQYEE EVRKNPLNYD SWFDYIRLEE NTGNKARTRE VYERAIANVP PAEEKRYWQR YIYLWINYAL YEELEAEDAE
401: RTRDVYRECL KLIPHDKFSF AKIWLMAGQF EIRQLNLKGA RQILGNAIGK APKDKIFKKY IEIELQLGNI DRCRKLYEKY LEWSPENCYA WSKYAELEKS
501: LSETERARAI FELAIAQPAL DMPELLWKAY IDFEISEGEF ERTRELYERL LDRTKHLKVW ISYAKFEASA MVEDDMGSDL PEDDAQESIL EEKRQCIERA
601: RRVFEKAVNY FRTSAPELKE ERTMLLEEWL NMESSFGELG DVSLVQIKLP KKLKKKRQIV TEDGPSGYEE YIDYLFPEET QTTNLKILEA AYRWKKQKTS
701: DDE

Best Arabidopsis Sequence Match ( AT5G41770.1 )
(BLAST)

001: MASGGKDSDR TLGYMTRKDT EVKLPRPTRV KNKTPAPIQI TAEQILREAR ERQEAEIRPP KQKITDSTEL SDYRLRRRKE FEDQIRRARW NIQVWVKYAQ
101: WEESQKDYAR ARSVWERAIE GDYRNHTLWL KYAEFEMKNK FVNSARNVWD RAVTLLPRVD QLWYKYIHME EILGNIAGAR QIFERWMDWS PDQQGWLSFI
201: KFELRYNEIE RARTIYERFV LCHPKVSAYI RYAKFEMKGG EVARCRSVYE RATEKLADDE EAEILFVAFA EFEERCKEVE RARFIYKFAL DHIPKGRAED
301: LYRKFVAFEK QYGDKEGIED AIVGKRRFQY EDEVRKSPSN YDSWFDYVRL EESVGNKDRI REIYERAIAN VPPAEEKRYW QRYIYLWINY ALFEEIETED
401: IERTRDVYRE CLKLIPHSKF SFAKIWLLAA QFEIRQLNLT GARQILGNAI GKAPKDKIFK KYIEIELQLG NMDRCRKLYE RYLEWSPENC YAWSKYAELE
501: RSLVETERAR AIFELAISQP ALDMPELLWK AYIDFEISEG ELERTRALYE RLLDRTKHYK VWVSFAKFEA SAAELEEDEN EDEDQEEDVI EHKKDCIKRA
601: RAIFDRANTY YKDSTPELKE ERATLLEDWL NMESSFGNLG DVSIVQSKLP KKLKKRKAIT REDGSTEYEE YIDYLYPEES QTTNLKILEA AYKWKKQKVA
701: ASEDD

Arabidopsis Description

Crooked neck protein, putative / cell cycle protein [Source:UniProtKB/TrEMBL;Acc:F4JZX8]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.