Factsheet for Solyc12g056080.1.1

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 4
mitochondrion 1
cytosol 2

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	cytosol, mitochondrion, nucleus
BaCelLo:	nucleus
EpiLoc:	nucleus
MultiLoc:	nucleus
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	cytosol

nucleus: 28394025

msms PMID: 28394025 doi

AJM Howden, R Stam, V Martinez Heredia, GB Motion, S Ten Have, K Hodge, TM Marques Monteiro Amaro, E Huitema

Cell and Molecular Sciences, JHI, Invergowrie, Dundee, DD2 5DA, UK., Division of Plant Science, School of Life Sciences, University of Dundee at the James Hutton Institute (JHI), Invergowrie, Dundee, DD2 5DA, UK., Dundee Effector Consortium, JHI, Invergowrie, Dundee, DD2 5DA, UK., Section of Population Genetics, Technische Universität München, 85354, Freising, Germany., Wellcome Trust Centre for Gene Regulation and Expression, School of Life Sciences, University of Dundee, Dow Street, Dundee, DD1 5EH, UK.

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
PGSC0003DMT400012873	Potato	cytosol	99.86	99.86
Solyc03g007850.1.1	Tomato	mitochondrion	84.56	87.07
Solyc03g007560.2.1	Tomato	cytosol, mitochondrion	81.82	85.39
KRH27855	Soybean	nucleus	85.43	85.18
KRH77629	Soybean	nucleus	85.43	85.18
VIT_02s0025g01160.t01	Wine grape	cytosol	86.15	84.92
EES19533	Sorghum	cytosol	73.59	70.83
EER93674	Sorghum	cytosol	73.74	70.78
TraesCS7A01G351600.1	Wheat	nucleus	73.16	70.51
TraesCS7B01G276500.1	Wheat	cytosol	73.02	70.38
TraesCS7D01G371400.1	Wheat	cytosol	73.02	70.38
Os05t0289400-01	Rice	nucleus	71.86	68.88
Zm00001d013548_P002	Maize	mitochondrion	59.74	68.54
Zm00001d033388_P001	Maize	cytosol	73.88	65.98
TraesCS5B01G277100.1	Wheat	cytosol, mitochondrion	53.68	65.84
TraesCS5D01G284700.1	Wheat	cytosol, mitochondrion	65.8	65.52
HORVU7Hr1G089610.1	Barley	nucleus, plastid	72.73	63.56
Solyc10g050500.1.1	Tomato	cytosol	6.2	62.32
HORVU5Hr1G075030.1	Barley	nucleus	63.35	61.14
Os06t0523900-00	Rice	cytosol, plastid	59.74	59.23
Bra023285.1-P	Field mustard	mitochondrion	10.1	42.68
Os10t0328700-01	Rice	mitochondrion	41.85	40.79
GSMUA_Achr5P12800_001	Banana	nucleus	6.2	21.5

Protein Annotations

Gene3D:1.25.40.10	MapMan:16.4.5.2.6	GO:GO:0000245	GO:GO:0000974	GO:GO:0003674	GO:GO:0005488
GO:GO:0005515	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005634	GO:GO:0006139
GO:GO:0006396	GO:GO:0008150	GO:GO:0008152	GO:GO:0009987	GO:GO:0016043	GO:GO:0071010
GO:GO:0071011	GO:GO:0071012	GO:GO:0071013	GO:GO:0071014	InterPro:HAT	InterPro:IPR011990
InterPro:IPR013026	UniProt:K4DFT9	PFAM:PF02184	PFscan:PS50293	PANTHER:PTHR11246	PANTHER:PTHR11246:SF3
SMART:SM00386	SUPFAM:SSF48452	EnsemblPlantsGene:Solyc12g056080.1	EnsemblPlants:Solyc12g056080.1.1	InterPro:TPR-contain_dom	InterPro:TPR-like_helical_dom_sf
UniParc:UPI0002769D33	SEG:seg	:	:	:	:

Description

No Description!

Coordinates

chr12:+:62049667..62058687

Molecular Weight (calculated)

83563.7 Da

IEP (calculated)

7.727

GRAVY (calculated)

-0.781

Length

693 amino acids

Sequence
(BLAST)

001: MGSRDADPSL GYLTRKETEV KLPRPTRVKN KTPAPIQITA EQILREARER QEAEIRPPKQ KITDPTELAD YRLRKRKEFE ALISRVRWNK SVWVKYAKWE
101: ESQKDFKRAR SIWERALEVD YRDHTMWLKY ADVEMKNKFV NHARNVWDRA VTLLPRVDQL WYKYIHMEEM LGNVAGARQI FERWMGWMPD QQGWLSYIKF
201: ELRYNEIERA RAIFERFVQC HPKVSAWIRF AKFEMKNGEI GRARNCYERA VDKLADDEEA EQLFVAFAEF EEKCKETERA RCIYKFALDH IPKGRAEDLY
301: RKFVAFEKQY GDREGIEDAI VGKRRFQYED EVRKNPRNYD TWFDYIRLEE SVGNKERIRE VYERAIANVP PAEEKRYWQR YIYLWINYAL YEELDAEDME
401: RTRDVYRECL KLIPHQKFSF AKIWLLAAQF EIRQLRLKEA RLLLGEAIGR APKDKIFKKY IEIELHFGNI DRCRKLYEKY LEWSPENCYA WSKFAELERS
501: LYETDRARAI FELAIDQPAL DMPELLWKAY IDFEISEGEF ERTRALYERL LNRTKHLKVW ISYAKFEASA MDPEAEEDIE LKKNCLQRAR DVFERAVSYF
601: RNSAPELKEE RAMLLEEWLN MESGFAELGD VSLVRAKLPK KLKKRRQIDM EDGPAAYEEY IDYLFPEETQ TTNLKILEAA YKWKKQRVAS EED

Best Arabidopsis Sequence Match ( AT5G41770.1 )
(BLAST)

001: MASGGKDSDR TLGYMTRKDT EVKLPRPTRV KNKTPAPIQI TAEQILREAR ERQEAEIRPP KQKITDSTEL SDYRLRRRKE FEDQIRRARW NIQVWVKYAQ
101: WEESQKDYAR ARSVWERAIE GDYRNHTLWL KYAEFEMKNK FVNSARNVWD RAVTLLPRVD QLWYKYIHME EILGNIAGAR QIFERWMDWS PDQQGWLSFI
201: KFELRYNEIE RARTIYERFV LCHPKVSAYI RYAKFEMKGG EVARCRSVYE RATEKLADDE EAEILFVAFA EFEERCKEVE RARFIYKFAL DHIPKGRAED
301: LYRKFVAFEK QYGDKEGIED AIVGKRRFQY EDEVRKSPSN YDSWFDYVRL EESVGNKDRI REIYERAIAN VPPAEEKRYW QRYIYLWINY ALFEEIETED
401: IERTRDVYRE CLKLIPHSKF SFAKIWLLAA QFEIRQLNLT GARQILGNAI GKAPKDKIFK KYIEIELQLG NMDRCRKLYE RYLEWSPENC YAWSKYAELE
501: RSLVETERAR AIFELAISQP ALDMPELLWK AYIDFEISEG ELERTRALYE RLLDRTKHYK VWVSFAKFEA SAAELEEDEN EDEDQEEDVI EHKKDCIKRA
601: RAIFDRANTY YKDSTPELKE ERATLLEDWL NMESSFGNLG DVSIVQSKLP KKLKKRKAIT REDGSTEYEE YIDYLYPEES QTTNLKILEA AYKWKKQKVA
701: ASEDD

Arabidopsis Description

Crooked neck protein, putative / cell cycle protein [Source:UniProtKB/TrEMBL;Acc:F4JZX8]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.