Factsheet for PGSC0003DMT400012873

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 4
mitochondrion 1
cytosol 2

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, mitochondrion, nucleus
BaCelLo:	nucleus
EpiLoc:	nucleus
MultiLoc:	nucleus
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Solyc12g056080.1.1	Tomato	nucleus	99.86	99.86
PGSC0003DMT400072653	Potato	cytosol, mitochondrion, nucleus, plastid	85.43	88.89
PGSC0003DMT400024585	Potato	cytosol	78.64	88.47
KRH27855	Soybean	nucleus	85.28	85.04
KRH77629	Soybean	nucleus	85.28	85.04
VIT_02s0025g01160.t01	Wine grape	cytosol	86.15	84.92
PGSC0003DMT400016837	Potato	mitochondrion	31.02	82.69
PGSC0003DMT400015907	Potato	cytosol	18.61	71.27
EES19533	Sorghum	cytosol	73.59	70.83
EER93674	Sorghum	cytosol	73.74	70.78
TraesCS7A01G351600.1	Wheat	nucleus	73.16	70.51
TraesCS7B01G276500.1	Wheat	cytosol	73.02	70.38
TraesCS7D01G371400.1	Wheat	cytosol	73.02	70.38
Os05t0289400-01	Rice	nucleus	71.86	68.88
Zm00001d013548_P002	Maize	mitochondrion	59.74	68.54
Zm00001d033388_P001	Maize	cytosol	73.88	65.98
TraesCS5B01G277100.1	Wheat	cytosol, mitochondrion	53.68	65.84
TraesCS5D01G284700.1	Wheat	cytosol, mitochondrion	65.8	65.52
HORVU7Hr1G089610.1	Barley	nucleus, plastid	72.73	63.56
HORVU5Hr1G075030.1	Barley	nucleus	63.35	61.14
Os06t0523900-00	Rice	cytosol, plastid	59.74	59.23
PGSC0003DMT400041076	Potato	nucleus	16.74	56.86
Bra023285.1-P	Field mustard	mitochondrion	10.1	42.68
Os10t0328700-01	Rice	mitochondrion	41.85	40.79
GSMUA_Achr5P12800_001	Banana	nucleus	6.06	21.0

Protein Annotations

Gene3D:1.25.40.10	EntrezGene:102604573	MapMan:16.4.5.2.6	ncoils:Coil	GO:GO:0003674	GO:GO:0005488
GO:GO:0005515	GO:GO:0006139	GO:GO:0006396	GO:GO:0008150	GO:GO:0008152	GO:GO:0009987
InterPro:HAT	InterPro:IPR011990	InterPro:IPR013026	UniProt:M1A1Y0	PFAM:PF02184	EnsemblPlantsGene:PGSC0003DMG400005011
PGSC:PGSC0003DMG400005011	EnsemblPlants:PGSC0003DMT400012873	PFscan:PS50293	PANTHER:PTHR11246	PANTHER:PTHR11246:SF3	SMART:SM00386
SUPFAM:SSF48452	InterPro:TPR-contain_dom	InterPro:TPR-like_helical_dom_sf	UniParc:UPI000296335A	RefSeq:XP_006360703.1	SEG:seg

Description

Crooked neck protein [Source:PGSC_GENE;Acc:PGSC0003DMG400005011]

Coordinates

chr12:+:53748749..53757005

Molecular Weight (calculated)

83533.6 Da

IEP (calculated)

7.727

GRAVY (calculated)

-0.778

Length

693 amino acids

Sequence
(BLAST)

001: MGSRDADPSL GYLTRKETEV KLPRPTRVKN KTPAPIQITA EQILREARER QEAEIRPPKQ KITDPTELAD YRLRKRKEFE ALISRVRWNK SVWVKYAKWE
101: ESQKDFKRAR SIWERALEVD YRDHTMWLKY ADVEMKNKFV NHARNVWDRA VTLLPRVDQL WYKYIHMEEM LGNVAGARQI FERWMGWMPD QQGWLSYIKF
201: ELRYNEIERA RAIFERFVQC HPKVSAWIRF AKFEMKNGEI GRARNCYERA VDKLADDEEA EQLFVAFAEF EEKCKEAERA RCIYKFALDH IPKGRAEDLY
301: RKFVAFEKQY GDREGIEDAI VGKRRFQYED EVRKNPRNYD TWFDYIRLEE SVGNKERIRE VYERAIANVP PAEEKRYWQR YIYLWINYAL YEELDAEDME
401: RTRDVYRECL KLIPHQKFSF AKIWLLAAQF EIRQLRLKEA RLLLGEAIGR APKDKIFKKY IEIELHFGNI DRCRKLYEKY LEWSPENCYA WSKFAELERS
501: LYETDRARAI FELAIDQPAL DMPELLWKAY IDFEISEGEF ERTRALYERL LNRTKHLKVW ISYAKFEASA MDPEAEEDIE LKKNCLQRAR DVFERAVSYF
601: RNSAPELKEE RAMLLEEWLN MESGFAELGD VSLVRAKLPK KLKKRRQIDM EDGPAAYEEY IDYLFPEETQ TTNLKILEAA YKWKKQRVAS EED

Best Arabidopsis Sequence Match ( AT5G41770.1 )
(BLAST)

001: MASGGKDSDR TLGYMTRKDT EVKLPRPTRV KNKTPAPIQI TAEQILREAR ERQEAEIRPP KQKITDSTEL SDYRLRRRKE FEDQIRRARW NIQVWVKYAQ
101: WEESQKDYAR ARSVWERAIE GDYRNHTLWL KYAEFEMKNK FVNSARNVWD RAVTLLPRVD QLWYKYIHME EILGNIAGAR QIFERWMDWS PDQQGWLSFI
201: KFELRYNEIE RARTIYERFV LCHPKVSAYI RYAKFEMKGG EVARCRSVYE RATEKLADDE EAEILFVAFA EFEERCKEVE RARFIYKFAL DHIPKGRAED
301: LYRKFVAFEK QYGDKEGIED AIVGKRRFQY EDEVRKSPSN YDSWFDYVRL EESVGNKDRI REIYERAIAN VPPAEEKRYW QRYIYLWINY ALFEEIETED
401: IERTRDVYRE CLKLIPHSKF SFAKIWLLAA QFEIRQLNLT GARQILGNAI GKAPKDKIFK KYIEIELQLG NMDRCRKLYE RYLEWSPENC YAWSKYAELE
501: RSLVETERAR AIFELAISQP ALDMPELLWK AYIDFEISEG ELERTRALYE RLLDRTKHYK VWVSFAKFEA SAAELEEDEN EDEDQEEDVI EHKKDCIKRA
601: RAIFDRANTY YKDSTPELKE ERATLLEDWL NMESSFGNLG DVSIVQSKLP KKLKKRKAIT REDGSTEYEE YIDYLYPEES QTTNLKILEA AYKWKKQKVA
701: ASEDD

Arabidopsis Description

Crooked neck protein, putative / cell cycle protein [Source:UniProtKB/TrEMBL;Acc:F4JZX8]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.