Factsheet for PGSC0003DMT400015907

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 2
cytosol 2
mitochondrion 2

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, mitochondrion, nucleus
BaCelLo:	nucleus
MultiLoc:	cytosol
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	mitochondrion
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
PGSC0003DMT400024585	Potato	cytosol	67.96	19.97
PGSC0003DMT400012873	Potato	cytosol	71.27	18.61
PGSC0003DMT400072653	Potato	cytosol, mitochondrion, nucleus, plastid	67.96	18.47
KRH27855	Soybean	nucleus	67.4	17.55
KRH77629	Soybean	nucleus	67.4	17.55
VIT_02s0025g01160.t01	Wine grape	cytosol	67.4	17.35
Zm00001d013548_P002	Maize	mitochondrion	55.25	16.56
Os05t0289400-01	Rice	nucleus	56.91	14.25
EES19533	Sorghum	cytosol	55.8	14.03
EER93674	Sorghum	cytosol	55.8	13.99
TraesCS7D01G371400.1	Wheat	cytosol	54.7	13.77
TraesCS7B01G276500.1	Wheat	cytosol	54.7	13.77
TraesCS7A01G351600.1	Wheat	nucleus	54.7	13.77
Zm00001d033388_P001	Maize	cytosol	55.8	13.02
HORVU5Hr1G075030.1	Barley	nucleus	50.83	12.81
TraesCS5D01G284700.1	Wheat	cytosol, mitochondrion	48.62	12.64
HORVU7Hr1G089610.1	Barley	nucleus, plastid	54.7	12.48
TraesCS5B01G277100.1	Wheat	cytosol, mitochondrion	34.25	10.97
Os10t0328700-01	Rice	mitochondrion	39.78	10.13
Os06t0523900-00	Rice	cytosol, plastid	37.02	9.59
Bra023285.1-P	Field mustard	mitochondrion	8.29	9.15
GSMUA_Achr5P12800_001	Banana	nucleus	3.87	3.5
PGSC0003DMT400016837	Potato	mitochondrion	4.42	3.08
PGSC0003DMT400041076	Potato	nucleus	0.0	0.0

Protein Annotations

EnsemblPlants:PGSC0003DMT400015907	EnsemblPlantsGene:PGSC0003DMG400006218	Gene3D:1.25.40.10	GO:GO:0003674	GO:GO:0005488	GO:GO:0005515
GO:GO:0006139	GO:GO:0006396	GO:GO:0008150	GO:GO:0008152	GO:GO:0009987	InterPro:HAT
InterPro:IPR011990	InterPro:TPR-like_helical_dom_sf	PANTHER:PTHR11246	PANTHER:PTHR11246:SF3	PFAM:PF02184	PGSC:PGSC0003DMG400006218
SMART:SM00386	SUPFAM:SSF48452	UniParc:UPI000294D364	UniProt:M1A6T1	MapMan:16.4.5.2.6	:

Description

Crooked neck protein [Source:PGSC_GENE;Acc:PGSC0003DMG400006218]

Coordinates

chr10:+:42799852..42800397

Molecular Weight (calculated)

22251.6 Da

IEP (calculated)

6.145

GRAVY (calculated)

-0.697

Length

181 amino acids

Sequence
(BLAST)

001: MALEKRREFE LLISRPPWNN STVWIEYAKW EESQNEFGRA RSIWNRALKK DYRDHTMWLM YGDMEMKNNF IDHALNVWDL AVTFFPKVDE LWYKYIHMEE
101: MMLNNVAGAR QVFERWMAWT PDQQSWLSYI EFELRYNETE RAREIFERLV QCHPKVSSWV EFVKFEMKNG EGKKLLQEGC R

Best Arabidopsis Sequence Match ( AT5G41770.1 )
(BLAST)

001: MASGGKDSDR TLGYMTRKDT EVKLPRPTRV KNKTPAPIQI TAEQILREAR ERQEAEIRPP KQKITDSTEL SDYRLRRRKE FEDQIRRARW NIQVWVKYAQ
101: WEESQKDYAR ARSVWERAIE GDYRNHTLWL KYAEFEMKNK FVNSARNVWD RAVTLLPRVD QLWYKYIHME EILGNIAGAR QIFERWMDWS PDQQGWLSFI
201: KFELRYNEIE RARTIYERFV LCHPKVSAYI RYAKFEMKGG EVARCRSVYE RATEKLADDE EAEILFVAFA EFEERCKEVE RARFIYKFAL DHIPKGRAED
301: LYRKFVAFEK QYGDKEGIED AIVGKRRFQY EDEVRKSPSN YDSWFDYVRL EESVGNKDRI REIYERAIAN VPPAEEKRYW QRYIYLWINY ALFEEIETED
401: IERTRDVYRE CLKLIPHSKF SFAKIWLLAA QFEIRQLNLT GARQILGNAI GKAPKDKIFK KYIEIELQLG NMDRCRKLYE RYLEWSPENC YAWSKYAELE
501: RSLVETERAR AIFELAISQP ALDMPELLWK AYIDFEISEG ELERTRALYE RLLDRTKHYK VWVSFAKFEA SAAELEEDEN EDEDQEEDVI EHKKDCIKRA
601: RAIFDRANTY YKDSTPELKE ERATLLEDWL NMESSFGNLG DVSIVQSKLP KKLKKRKAIT REDGSTEYEE YIDYLYPEES QTTNLKILEA AYKWKKQKVA
701: ASEDD

Arabidopsis Description

Crooked neck protein, putative / cell cycle protein [Source:UniProtKB/TrEMBL;Acc:F4JZX8]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.