Factsheet for Bra028504.1-P

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 4
mitochondrion 1
cytosol 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	cytosol, mitochondrion, nucleus
BaCelLo:	nucleus
EpiLoc:	nucleus
MultiLoc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDX67505	Canola	nucleus	93.77	99.25
Bra025462.1-P	Field mustard	nucleus	97.31	97.31
AT5G41770.1	Thale cress	nucleus	92.49	92.62
Bra038885.1-P	Field mustard	nucleus	33.29	73.9
Bra031930.1-P	Field mustard	cytosol	67.71	71.66
EES19533	Sorghum	cytosol	71.39	70.0
EER93674	Sorghum	cytosol	71.25	69.67
Os05t0289400-01	Rice	nucleus	70.96	69.29
TraesCS7D01G371400.1	Wheat	cytosol	69.83	68.57
TraesCS7B01G276500.1	Wheat	cytosol	69.83	68.57
TraesCS7A01G351600.1	Wheat	nucleus	69.83	68.57
Zm00001d013548_P002	Maize	mitochondrion	57.51	67.22
Zm00001d033388_P001	Maize	cytosol	71.25	64.82
TraesCS5B01G277100.1	Wheat	cytosol, mitochondrion	51.13	63.89
TraesCS5D01G284700.1	Wheat	cytosol, mitochondrion	62.32	63.22
HORVU7Hr1G089610.1	Barley	nucleus, plastid	69.55	61.92
HORVU5Hr1G075030.1	Barley	nucleus	60.91	59.89
Os06t0523900-00	Rice	cytosol, plastid	58.78	59.37
Bra023285.1-P	Field mustard	mitochondrion	10.62	45.73
Os10t0328700-01	Rice	mitochondrion	41.22	40.93
GSMUA_Achr5P12800_001	Banana	nucleus	6.37	22.5

Protein Annotations

Gene3D:1.25.40.10	MapMan:16.4.5.2.6	EnsemblPlantsGene:Bra028504	EnsemblPlants:Bra028504.1	EnsemblPlants:Bra028504.1-P	ncoils:Coil
GO:GO:0003674	GO:GO:0005488	GO:GO:0005515	GO:GO:0006139	GO:GO:0006396	GO:GO:0008150
GO:GO:0008152	GO:GO:0009987	InterPro:HAT	InterPro:IPR011990	InterPro:IPR013026	UniProt:M4EI89
PFAM:PF02184	PFscan:PS50293	PANTHER:PTHR11246	PANTHER:PTHR11246:SF3	SMART:SM00386	SUPFAM:SSF48452
InterPro:TPR-contain_dom	InterPro:TPR-like_helical_dom_sf	UniParc:UPI0002543396	SEG:seg	:	:

Description

AT5G41770 (E=0.0) | crooked neck protein, putative / cell cycle protein, putative

Coordinates

chrA02:+:760172..763325

Molecular Weight (calculated)

84808.4 Da

IEP (calculated)

6.129

GRAVY (calculated)

-0.855

Length

706 amino acids

Sequence
(BLAST)

001: MASGKDSDRT LGYMTRKDTE VKLPRPTRVK NKTPAPVQIT AEQILREARE RQEAEIRPPK QKITDSTELS DYRLRRRKEF EDQIRRARWN IQVWMKYAQW
101: EESQKDYARA RSVWERAIEG DYRNHTLWLK YAEFEMKNKF VNSARNVWDR AVTLLPRVDQ LWYKYIHMEE ILGNIAGARQ IFERWMQWSP DQQGWLSFVK
201: FELRYNEIER ARSIYERFVL CHPKVSAFIR FAKFEMKGGE VARARHVYER ATEKLAEDEE AETLFVAFAE FEERCKEPER ARFIYKFALD HIPKGRAEDL
301: YKKFVAFEKQ YGDKEGIEDA IVGKRRFQYE DEVRKNPLNY DSWFDYVRLE ETVGNKDRIR EIYERAIANI PPAEEKRYWQ RYIYLWINYA LYEEIETEDV
401: ERTRDVYREC LKLIPHSKFS FAKIWLLAAQ FEIRQLNLAG ARQILGNAIG KAPKDKIFKK YIEIELQLGN IDRCRKLYER YLEWSPENCY AWSKYAELER
501: SLAETERARA IFELAISQPA LDMPELLWKA YIDFEMAEGE LERTRALYER LLDRTKHYKV LVSFAKFEAS AAEQEEDEEE EDQEETDAIE RKKECIRRAR
601: AIFERANSYY KDSAPELKEE RATLLEDWLN METNFGKLGD VSVVQSKLPK KLKKRKPITR EDGSTEYEEY IDYLYPEESQ TTNLKILEAA YKWKKQKLAT
701: SEEEYD

Best Arabidopsis Sequence Match ( AT5G41770.1 )
(BLAST)

001: MASGGKDSDR TLGYMTRKDT EVKLPRPTRV KNKTPAPIQI TAEQILREAR ERQEAEIRPP KQKITDSTEL SDYRLRRRKE FEDQIRRARW NIQVWVKYAQ
101: WEESQKDYAR ARSVWERAIE GDYRNHTLWL KYAEFEMKNK FVNSARNVWD RAVTLLPRVD QLWYKYIHME EILGNIAGAR QIFERWMDWS PDQQGWLSFI
201: KFELRYNEIE RARTIYERFV LCHPKVSAYI RYAKFEMKGG EVARCRSVYE RATEKLADDE EAEILFVAFA EFEERCKEVE RARFIYKFAL DHIPKGRAED
301: LYRKFVAFEK QYGDKEGIED AIVGKRRFQY EDEVRKSPSN YDSWFDYVRL EESVGNKDRI REIYERAIAN VPPAEEKRYW QRYIYLWINY ALFEEIETED
401: IERTRDVYRE CLKLIPHSKF SFAKIWLLAA QFEIRQLNLT GARQILGNAI GKAPKDKIFK KYIEIELQLG NMDRCRKLYE RYLEWSPENC YAWSKYAELE
501: RSLVETERAR AIFELAISQP ALDMPELLWK AYIDFEISEG ELERTRALYE RLLDRTKHYK VWVSFAKFEA SAAELEEDEN EDEDQEEDVI EHKKDCIKRA
601: RAIFDRANTY YKDSTPELKE ERATLLEDWL NMESSFGNLG DVSIVQSKLP KKLKKRKAIT REDGSTEYEE YIDYLYPEES QTTNLKILEA AYKWKKQKVA
701: ASEDD

Arabidopsis Description

Crooked neck protein, putative / cell cycle protein [Source:UniProtKB/TrEMBL;Acc:F4JZX8]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.