CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion

Predictor Summary:

plastid 1
mitochondrion 5
nucleus 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	mitochondrion
Any Predictor:	mitochondrion, plastid
BaCelLo:	plastid
iPSORT:	mitochondrion
MultiLoc:	mitochondrion
PProwler:	mitochondrion
TargetP:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	mitochondrion

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY38549	Canola	extracellular	44.06	77.78
CDX89268	Canola	cytosol	53.15	60.32
CDY51192	Canola	cytosol	50.35	49.66
CDY14715	Canola	cytosol	38.46	26.07
CDX98687	Canola	endoplasmic reticulum, nucleus, plastid	70.63	23.76
CDY49876	Canola	nucleus	82.52	17.69
CDY27682	Canola	nucleus	82.52	17.69
CDX67505	Canola	nucleus	81.82	17.54
CDY35016	Canola	nucleus	82.52	17.33
CDX94039	Canola	nucleus	73.43	16.38
CDY31331	Canola	cytosol, nucleus, plastid	66.43	14.73
CDY63724	Canola	plastid	65.73	14.4
TraesCS5B01G277100.1	Wheat	cytosol, mitochondrion	54.55	13.81
TraesCS7A01G351600.1	Wheat	nucleus	63.64	12.66
TraesCS7B01G276500.1	Wheat	cytosol	63.64	12.66
TraesCS7D01G371400.1	Wheat	cytosol	63.64	12.66
Os06t0523900-00	Rice	cytosol, plastid	61.54	12.59
Os05t0289400-01	Rice	nucleus	63.64	12.59
EER93674	Sorghum	cytosol	62.24	12.33
EES19533	Sorghum	cytosol	61.54	12.22
HORVU5Hr1G075030.1	Barley	nucleus	59.44	11.84
HORVU7Hr1G089610.1	Barley	nucleus, plastid	63.64	11.48
Zm00001d033388_P001	Maize	cytosol	62.24	11.47
TraesCS5D01G284700.1	Wheat	cytosol, mitochondrion	53.85	11.06
Zm00001d013548_P002	Maize	mitochondrion	32.17	7.62
Os10t0328700-01	Rice	mitochondrion	31.47	6.33
CDX93820	Canola	cytosol	2.8	2.14
CDY16320	Canola	cytosol, mitochondrion	2.8	2.06
GSMUA_Achr5P12800_001	Banana	nucleus	0.0	0.0
CDY16319	Canola	nucleus	0.0	0.0

Protein Annotations

Gene3D:1.25.40.10	MapMan:16.4.5.2.6	GO:A0A078IKD3	UniProt:A0A078IKD3	EnsemblPlants:CDY49874	ProteinID:CDY49874
ProteinID:CDY49874.1	ncoils:Coil	GO:GO:0003674	GO:GO:0005488	GO:GO:0005515	GO:GO:0006139
GO:GO:0006396	GO:GO:0008150	GO:GO:0008152	GO:GO:0009987	EnsemblPlantsGene:GSBRNA2T00094013001	InterPro:HAT
InterPro:IPR011990	PANTHER:PTHR11246	PANTHER:PTHR11246:SF3	SMART:SM00386	SUPFAM:SSF48452	InterPro:TPR-like_helical_dom_sf
UniParc:UPI0004EE4688	:	:	:	:	:

Description

BnaA04g11400DBnaA04g11400D protein [Source:UniProtKB/TrEMBL;Acc:A0A078IKD3]

Coordinates

chrLK032865:-:32418..33634

Molecular Weight (calculated)

17071.7 Da

IEP (calculated)

8.776

GRAVY (calculated)

-0.543

Length

143 amino acids

Sequence
(BLAST)

001: MQNRFRMVNG VHGLRTMFGI NYALYEKIET EDVERTRDVY RQILGNAIGK APKDKIFKKY IEIELQMGNI DRCRKLYERY LEWSPENCYA WSKYAELERS
101: LAETERARAI FELAISQPAL DMPELLWKCI RRTRGNFELH VVT

Best Arabidopsis Sequence Match ( AT3G13210.1 )
(BLAST)

001: MASGKDSDRN LGYMTRKDAE LKLPRMTQVK NKTPAPIQIT AEQILREARE RQEAEFRPPN QTITDSAELS DYRLRRRKEF EDQIRRARLN TQVWVKYADF
101: EMKNKSVNEA RNVWDRAVSL LPRVDQLWYK FIHMEEKLGN IAGARQILER WIHCSPDQQA WLCFIKFELK YNEIECARSI YERFVLCHPK VSAYIRYAKF
201: EMKHGQVELA MKVFERAKKE LADDEEAEIL FVAFAEFEEQ YKFALDQIPK GRAENLYSKF VAFEKQNGDK EGIEDAIIGK RRCQYEDEVR KNPLNYDSWF
301: DFVRLEETVG NKDRIREIYE RAVANVPPPE AQEKRYWQRY IYLWINYAFF AEMVTEDVES TRDVYRACLK LIPHSKFSFA KIWLLAAQHE IRQLNLTGAR
401: QILGNAIGKA PKDKIFKKYI EIELQLRNID RCRKLYERYL EWSPGNCYAW RKYAEFEMSL AETERTRAIF ELAISQPALD MPELLWKTYI DFEISEGELE
501: RTRALYERLL DRTKHCKVWV DFAKFEASAA EHKEDEEEED AIERKKDGIK RAREIFDRAN TYNKDSTPEL KEERAMLLED WLNMETGFGK LGDVRVVQSK
601: LPKKVKKRKL SSREDGCTEY EEYTDYLFPE ESETTSLKIL EAAHKWKKQK VKAGECV

Arabidopsis Description

Crooked neck protein, putative / cell cycle protein [Source:UniProtKB/TrEMBL;Acc:F4JC74]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.