CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 1
peroxisome 1
mitochondrion 1
cytosol 2

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, nucleus, peroxisome
BaCelLo:	nucleus
MultiLoc:	peroxisome
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY38549	Canola	extracellular	38.62	69.14
CDX89268	Canola	cytosol	52.41	60.32
CDY49874	Canola	mitochondrion	49.66	50.35
CDY14715	Canola	cytosol	47.59	32.7
CDX98687	Canola	endoplasmic reticulum, nucleus, plastid	61.38	20.94
CDY27682	Canola	nucleus	76.55	16.64
CDX67505	Canola	nucleus	75.86	16.49
CDY49876	Canola	nucleus	75.86	16.49
CDY35016	Canola	nucleus	76.55	16.3
CDX93820	Canola	cytosol	19.31	14.97
CDX94039	Canola	nucleus	64.83	14.66
TraesCS5B01G277100.1	Wheat	cytosol, mitochondrion	55.17	14.16
CDY31331	Canola	cytosol, nucleus, plastid	59.31	13.33
Os05t0289400-01	Rice	nucleus	64.14	12.86
TraesCS7A01G351600.1	Wheat	nucleus	63.45	12.8
TraesCS7B01G276500.1	Wheat	cytosol	63.45	12.8
TraesCS7D01G371400.1	Wheat	cytosol	63.45	12.8
EES19533	Sorghum	cytosol	63.45	12.78
EER93674	Sorghum	cytosol	63.45	12.74
CDY63724	Canola	plastid	57.24	12.71
Os06t0523900-00	Rice	cytosol, plastid	60.69	12.59
TraesCS5D01G284700.1	Wheat	cytosol, mitochondrion	58.62	12.21
HORVU5Hr1G075030.1	Barley	nucleus	60.0	12.12
Zm00001d033388_P001	Maize	cytosol	63.45	11.86
HORVU7Hr1G089610.1	Barley	nucleus, plastid	63.45	11.6
Zm00001d013548_P002	Maize	mitochondrion	45.52	10.93
CDY16320	Canola	cytosol, mitochondrion	12.41	9.28
Os10t0328700-01	Rice	mitochondrion	36.55	7.45
GSMUA_Achr5P12800_001	Banana	nucleus	3.45	2.5
CDY16319	Canola	nucleus	0.69	1.15

Protein Annotations

Gene3D:1.25.40.10	MapMan:35.2	GO:A0A078IMP0	UniProt:A0A078IMP0	EnsemblPlants:CDY51192	ProteinID:CDY51192
ProteinID:CDY51192.1	GO:GO:0003674	GO:GO:0005488	GO:GO:0005515	GO:GO:0006139	GO:GO:0006396
GO:GO:0008150	GO:GO:0008152	GO:GO:0009987	EnsemblPlantsGene:GSBRNA2T00098402001	InterPro:HAT	InterPro:IPR011990
PANTHER:PTHR11246	PANTHER:PTHR11246:SF3	SMART:SM00386	SUPFAM:SSF48452	InterPro:TPR-like_helical_dom_sf	UniParc:UPI0004EE2B70

Description

BnaC03g69000DBnaC03g69000D protein [Source:UniProtKB/TrEMBL;Acc:A0A078IMP0]

Coordinates

chrLK032974:+:29184..31277

Molecular Weight (calculated)

17556.7 Da

IEP (calculated)

4.197

GRAVY (calculated)

-0.541

Length

145 amino acids

Sequence
(BLAST)

001: MLVGFRTSDI LVLDVWQQRW MIGYGDKEGI EDAIAGNRRF QYEDEVRKNP LNYDSWINYA LYEEIKTEDV ERTRDIFKNY IEIEIELQLG NIDRCRKLYE
101: LYLEWFPENC YAWNKYAELE RYLAETELAR TIFELAISQP TLDMP

Best Arabidopsis Sequence Match ( AT5G41770.1 )
(BLAST)

001: MASGGKDSDR TLGYMTRKDT EVKLPRPTRV KNKTPAPIQI TAEQILREAR ERQEAEIRPP KQKITDSTEL SDYRLRRRKE FEDQIRRARW NIQVWVKYAQ
101: WEESQKDYAR ARSVWERAIE GDYRNHTLWL KYAEFEMKNK FVNSARNVWD RAVTLLPRVD QLWYKYIHME EILGNIAGAR QIFERWMDWS PDQQGWLSFI
201: KFELRYNEIE RARTIYERFV LCHPKVSAYI RYAKFEMKGG EVARCRSVYE RATEKLADDE EAEILFVAFA EFEERCKEVE RARFIYKFAL DHIPKGRAED
301: LYRKFVAFEK QYGDKEGIED AIVGKRRFQY EDEVRKSPSN YDSWFDYVRL EESVGNKDRI REIYERAIAN VPPAEEKRYW QRYIYLWINY ALFEEIETED
401: IERTRDVYRE CLKLIPHSKF SFAKIWLLAA QFEIRQLNLT GARQILGNAI GKAPKDKIFK KYIEIELQLG NMDRCRKLYE RYLEWSPENC YAWSKYAELE
501: RSLVETERAR AIFELAISQP ALDMPELLWK AYIDFEISEG ELERTRALYE RLLDRTKHYK VWVSFAKFEA SAAELEEDEN EDEDQEEDVI EHKKDCIKRA
601: RAIFDRANTY YKDSTPELKE ERATLLEDWL NMESSFGNLG DVSIVQSKLP KKLKKRKAIT REDGSTEYEE YIDYLYPEES QTTNLKILEA AYKWKKQKVA
701: ASEDD

Arabidopsis Description

Crooked neck protein, putative / cell cycle protein [Source:UniProtKB/TrEMBL;Acc:F4JZX8]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.