CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: endoplasmic reticulum, plastid, nucleus

Predictor Summary:

nucleus 2
endoplasmic reticulum 2
extracellular 1
vacuole 1
plasma membrane 1
golgi 1
plastid 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	endoplasmic reticulum, nucleus, plastid
Any Predictor:	endoplasmic reticulum, nucleus, plastid
BaCelLo:	nucleus
MultiLoc:	endoplasmic reticulum
PProwler:	secretory
WoLF PSORT:	plastid
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDX89268	Canola	cytosol	20.94	70.63
CDY49874	Canola	mitochondrion	23.76	70.63
CDY38549	Canola	extracellular	12.47	65.43
CDY51192	Canola	cytosol	20.94	61.38
CDX94039	Canola	nucleus	78.82	52.26
CDX67505	Canola	nucleus	73.65	46.93
CDY49876	Canola	nucleus	72.94	46.48
CDY27682	Canola	nucleus	72.71	46.33
CDY35016	Canola	nucleus	73.88	46.11
AT3G13210.1	Thale cress	nucleus	70.12	45.36
AT5G45990.2	Thale cress	nucleus	71.29	44.36
CDY14715	Canola	cytosol	20.47	41.23
TraesCS5B01G277100.1	Wheat	cytosol, mitochondrion	52.71	39.65
CDY63724	Canola	plastid	60.24	39.2
CDY31331	Canola	cytosol, nucleus, plastid	58.12	38.29
EES19533	Sorghum	cytosol	59.06	34.86
EER93674	Sorghum	cytosol	59.06	34.76
Os06t0523900-00	Rice	cytosol, plastid	56.71	34.48
TraesCS7A01G351600.1	Wheat	nucleus	58.12	34.35
TraesCS7D01G371400.1	Wheat	cytosol	57.88	34.21
TraesCS7B01G276500.1	Wheat	cytosol	57.88	34.21
Os05t0289400-01	Rice	nucleus	58.12	34.16
HORVU5Hr1G075030.1	Barley	nucleus	55.06	32.59
TraesCS5D01G284700.1	Wheat	cytosol, mitochondrion	53.18	32.47
Zm00001d033388_P001	Maize	cytosol	58.59	32.09
HORVU7Hr1G089610.1	Barley	nucleus, plastid	57.65	30.9
Zm00001d013548_P002	Maize	mitochondrion	41.88	29.47
CDX93820	Canola	cytosol	9.88	22.46
Os10t0328700-01	Rice	mitochondrion	31.76	18.99
CDY16320	Canola	cytosol, mitochondrion	6.59	14.43
GSMUA_Achr5P12800_001	Banana	nucleus	5.18	11.0
CDY16319	Canola	nucleus	0.47	2.3

Protein Annotations

Gene3D:1.25.40.10	MapMan:16.4.5.2.6	GO:A0A078ECE4	EnsemblPlants:CDX98687	ProteinID:CDX98687	ProteinID:CDX98687.1
GO:GO:0003674	GO:GO:0005488	GO:GO:0005515	GO:GO:0006139	GO:GO:0006396	GO:GO:0008150
GO:GO:0008152	GO:GO:0009987	EnsemblPlantsGene:GSBRNA2T00106749001	InterPro:HAT	InterPro:IPR011990	PANTHER:PTHR11246
PANTHER:PTHR11246:SF3	SMART:SM00386	SUPFAM:SSF48452	InterPro:TPR-like_helical_dom_sf	UniParc:UPI0004EF311A	SEG:seg

Description

BnaA03g44720D

Coordinates

chrLK031906:-:692806..695915

Molecular Weight (calculated)

49689.0 Da

IEP (calculated)

5.976

GRAVY (calculated)

-0.612

Length

425 amino acids

Sequence
(BLAST)

001: MSKESSETSS TKGLPDGRVV SYVESEFIAV VLFLHLLLHC LTGPILNQYG LAHIPKERAE ALYEKFVAFE KRYGGKEGIE DALVGKKRFE YEDEVRKNPL
101: NYDSWFDYLR LVEEEGFTGN KDRIREIYER AVANVPPAEE KRYWQRYIYL WINYALYEEI ETKDVERTRD VYGTCLKLIP HNKFSFAKIW LLAAQFEIRQ
201: LNLTGARQIL GNAIGKAPKD KIFKKYIEME LQLANIDRCR KLYERYLEWS PENCYAWQSY AEFEMSLSEK DRARAIFELA ISQHAVDMPE LLWKFEASAT
301: EHKGEEDKEE VAIETKKDCV RRARAIFERA NAYYKDSAHK EERATLLEDW ANMEAGFGSL GDVSVVQSLL PKKLKKRKPI SREDGSTEYQ EYTDYLFPDE
401: SQTMANLKIL EAAHRWKKQK AGECV

Best Arabidopsis Sequence Match ( AT3G13210.1 )
(BLAST)

001: MASGKDSDRN LGYMTRKDAE LKLPRMTQVK NKTPAPIQIT AEQILREARE RQEAEFRPPN QTITDSAELS DYRLRRRKEF EDQIRRARLN TQVWVKYADF
101: EMKNKSVNEA RNVWDRAVSL LPRVDQLWYK FIHMEEKLGN IAGARQILER WIHCSPDQQA WLCFIKFELK YNEIECARSI YERFVLCHPK VSAYIRYAKF
201: EMKHGQVELA MKVFERAKKE LADDEEAEIL FVAFAEFEEQ YKFALDQIPK GRAENLYSKF VAFEKQNGDK EGIEDAIIGK RRCQYEDEVR KNPLNYDSWF
301: DFVRLEETVG NKDRIREIYE RAVANVPPPE AQEKRYWQRY IYLWINYAFF AEMVTEDVES TRDVYRACLK LIPHSKFSFA KIWLLAAQHE IRQLNLTGAR
401: QILGNAIGKA PKDKIFKKYI EIELQLRNID RCRKLYERYL EWSPGNCYAW RKYAEFEMSL AETERTRAIF ELAISQPALD MPELLWKTYI DFEISEGELE
501: RTRALYERLL DRTKHCKVWV DFAKFEASAA EHKEDEEEED AIERKKDGIK RAREIFDRAN TYNKDSTPEL KEERAMLLED WLNMETGFGK LGDVRVVQSK
601: LPKKVKKRKL SSREDGCTEY EEYTDYLFPE ESETTSLKIL EAAHKWKKQK VKAGECV

Arabidopsis Description

Crooked neck protein, putative / cell cycle protein [Source:UniProtKB/TrEMBL;Acc:F4JC74]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.