Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- plastid 1
- cytosol 2
- mitochondrion 1
- nucleus 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDX92209 | Canola | nucleus | 81.82 | 28.46 |
| CDX95551 | Canola | cytosol | 81.82 | 28.46 |
| CDY24431 | Canola | nucleus | 80.68 | 28.06 |
| AT3G18165.1 | Thale cress | cytosol | 80.68 | 28.06 |
| VIT_17s0000g02840.t01 | Wine grape | cytosol, mitochondrion, nucleus | 60.23 | 25.6 |
| Solyc03g119010.2.1 | Tomato | nucleus | 60.23 | 22.08 |
| PGSC0003DMT400014424 | Potato | nucleus | 62.5 | 21.91 |
| KRH41788 | Soybean | nucleus | 60.23 | 21.03 |
| KRH60495 | Soybean | endoplasmic reticulum, nucleus | 60.23 | 20.95 |
| GSMUA_Achr3P18380_001 | Banana | cytosol | 42.05 | 18.32 |
| TraesCS3A01G181200.1 | Wheat | nucleus | 50.0 | 17.19 |
| EES00531 | Sorghum | cytosol | 48.86 | 16.93 |
| TraesCS3B01G211300.1 | Wheat | cytosol | 48.86 | 16.8 |
| TraesCS3D01G186100.1 | Wheat | cytosol | 48.86 | 16.8 |
| HORVU3Hr1G037080.1 | Barley | plastid | 47.73 | 14.09 |
| CDY18500 | Canola | cytosol | 82.95 | 12.19 |
| Zm00001d040357_P001 | Maize | cytosol | 48.86 | 11.91 |
| GSMUA_Achr3P18370_001 | Banana | cytosol | 3.41 | 2.1 |
Protein Annotations
| EnsemblPlants:CDY24603 | EnsemblPlantsGene:GSBRNA2T00026948001 | GO:A0A078GJ39 | GO:GO:0006139 | GO:GO:0006397 | GO:GO:0008150 |
| GO:GO:0008152 | GO:GO:0009987 | InterPro:SPF27 | ncoils:Coil | PANTHER:PTHR13296 | PFAM:PF05700 |
| ProteinID:CDY24603 | ProteinID:CDY24603.1 | UniParc:UPI0004EF31AC | UniProt:A0A078GJ39 | MapMan:16.4.5.1.1 | : |
Description
BnaC05g32870DBnaC05g32870D protein [Source:UniProtKB/TrEMBL;Acc:A0A078GJ39]
Coordinates
chrLK032161:-:333351..335240
Molecular Weight (calculated)
10611.8 Da
IEP (calculated)
9.739
GRAVY (calculated)
-0.966
Length
88 amino acids
Sequence
(BLAST)
(BLAST)
1: MKALCTFRGR LENLEVMSKH GPELWRQNNH RLEVFLTRMQ KLAHGQNEEI EKVNRERKYH QQTTAYELNA LSQEWRQLCV KKMEIQSA
001: MATNNGDVLM LEATPEAARP WASAANAEVI DALPYIDDDY GNPLIKSEVD RLVEEEMRRS SKKPADFLKD LPPLPKFDFK NCPVLGKEYE RVRAGKPPVR
101: IDFESRYKLE MPPANKRNDD AAWKQYLQKN QRSLQQKLIE LENLELMSKL GPELWRQNNH RLEVFLTRMQ RLAQEQNEEI EKVNRERKYH QQTTSYELNA
201: LSQEWRQLCV KNMEIQSACA MLETQIDSFK KEAAERGWNL EEKLENVEPL QMQ
101: IDFESRYKLE MPPANKRNDD AAWKQYLQKN QRSLQQKLIE LENLELMSKL GPELWRQNNH RLEVFLTRMQ RLAQEQNEEI EKVNRERKYH QQTTSYELNA
201: LSQEWRQLCV KNMEIQSACA MLETQIDSFK KEAAERGWNL EEKLENVEPL QMQ
Arabidopsis Description
MOS4Pre-mRNA-splicing factor SPF27 homolog [Source:UniProtKB/Swiss-Prot;Acc:Q949S9]
SUBAcon: [cytosol]
SUBAcon: [cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.