Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- nucleus 2
- cytosol 2
- plastid 2
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Solyc03g119010.2.1 | Tomato | nucleus | 66.43 | 39.58 |
| PGSC0003DMT400014424 | Potato | nucleus | 66.43 | 37.85 |
| KRH41788 | Soybean | nucleus | 62.24 | 35.32 |
| KRH60495 | Soybean | endoplasmic reticulum, nucleus | 60.84 | 34.39 |
| AT3G18165.1 | Thale cress | cytosol | 58.04 | 32.81 |
| CDX95551 | Canola | cytosol | 58.04 | 32.81 |
| CDY24431 | Canola | nucleus | 57.34 | 32.41 |
| Bra021297.1-P | Field mustard | cytosol | 56.64 | 32.02 |
| Bra022288.1-P | Field mustard | nucleus | 56.64 | 32.02 |
| CDX92209 | Canola | nucleus | 56.64 | 32.02 |
| VIT_17s0000g02840.t01 | Wine grape | cytosol, mitochondrion, nucleus | 44.76 | 30.92 |
| CDY18500 | Canola | cytosol | 56.64 | 13.52 |
| GSMUA_Achr3P18380_001 | Banana | cytosol | 15.38 | 10.89 |
| CDY24603 | Canola | cytosol | 2.1 | 3.41 |
Protein Annotations
| EnsemblPlants:GSMUA_Achr3P18370_001 | EnsemblPlants:GSMUA_Achr3T18370_001 | EnsemblPlantsGene:GSMUA_Achr3G18370_001 | GO:GO:0006139 | GO:GO:0006397 | GO:GO:0008150 |
| GO:GO:0008152 | GO:GO:0009987 | InterPro:SPF27 | PANTHER:PTHR13296 | PFAM:PF05700 | UniParc:UPI000294C8F8 |
| UniProt:M0SFQ3 | MapMan:16.4.5.1.1 | : | : | : | : |
Description
Pre-mRNA-splicing factor SPF27 homolog [Source:GMGC_GENE;Acc:GSMUA_Achr3G18370_001]
Coordinates
chr3:+:19837807..19839670
Molecular Weight (calculated)
16225.4 Da
IEP (calculated)
5.073
GRAVY (calculated)
-0.673
Length
143 amino acids
Sequence
(BLAST)
(BLAST)
001: MAGREILMLE APPDASRQGW SAGPDAELVD ALPYIDDDYG DPRVKGEVDR LVEEEMRRSG KKPADFLREL PPLPKLSFED HPMLAREYER VRAGKPPATL
101: EMSRYGLEPP PANKRNDVTA WRLALRNAQS LLQHQVIRQV VIE
101: EMSRYGLEPP PANKRNDVTA WRLALRNAQS LLQHQVIRQV VIE
001: MATNNGDVLM LEATPEAARP WASAANAEVI DALPYIDDDY GNPLIKSEVD RLVEEEMRRS SKKPADFLKD LPPLPKFDFK NCPVLGKEYE RVRAGKPPVR
101: IDFESRYKLE MPPANKRNDD AAWKQYLQKN QRSLQQKLIE LENLELMSKL GPELWRQNNH RLEVFLTRMQ RLAQEQNEEI EKVNRERKYH QQTTSYELNA
201: LSQEWRQLCV KNMEIQSACA MLETQIDSFK KEAAERGWNL EEKLENVEPL QMQ
101: IDFESRYKLE MPPANKRNDD AAWKQYLQKN QRSLQQKLIE LENLELMSKL GPELWRQNNH RLEVFLTRMQ RLAQEQNEEI EKVNRERKYH QQTTSYELNA
201: LSQEWRQLCV KNMEIQSACA MLETQIDSFK KEAAERGWNL EEKLENVEPL QMQ
Arabidopsis Description
MOS4Pre-mRNA-splicing factor SPF27 homolog [Source:UniProtKB/Swiss-Prot;Acc:Q949S9]
SUBAcon: [cytosol]
SUBAcon: [cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.