Factsheet for Solyc03g119010.2.1

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 3
cytosol 2
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	cytosol, mitochondrion, nucleus
BaCelLo:	nucleus
MultiLoc:	cytosol
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	nucleus

nucleus: 28394025

msms PMID: 28394025 doi

AJM Howden, R Stam, V Martinez Heredia, GB Motion, S Ten Have, K Hodge, TM Marques Monteiro Amaro, E Huitema

Cell and Molecular Sciences, JHI, Invergowrie, Dundee, DD2 5DA, UK., Division of Plant Science, School of Life Sciences, University of Dundee at the James Hutton Institute (JHI), Invergowrie, Dundee, DD2 5DA, UK., Dundee Effector Consortium, JHI, Invergowrie, Dundee, DD2 5DA, UK., Section of Population Genetics, Technische Universität München, 85354, Freising, Germany., Wellcome Trust Centre for Gene Regulation and Expression, School of Life Sciences, University of Dundee, Dow Street, Dundee, DD1 5EH, UK.

PPI

Inferred distinct locusB in Crop

locusB	locations
Solyc01g068480.2.1
Solyc01g088510.2.1
Solyc02g078970.2.1
Solyc03g044030.1.1
Solyc03g044040.1.1
Solyc03g059100.1.1
Solyc03g116620.2.1
Solyc04g009950.2.1
Solyc05g051070.2.1
Solyc06g043160.1.1
Solyc06g065300.2.1
Solyc06g068090.2.1
Solyc06g071620.2.1
Solyc06g082100.2.1
Solyc07g008880.2.1
Solyc09g010620.1.1
Solyc09g090660.2.1
Solyc10g062160.1.1
Solyc10g081070.1.1
Solyc10g081090.1.1
Solyc11g056680.1.1

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT3G18165.1	Solyc09g090660.2.1	AT1G04510.1	19629177
AT3G18165.1	Solyc04g009950.2.1	AT1G09770.1	17575050
AT3G18165.1	Solyc04g009950.2.1	AT1G09770.1	19629177
AT3G18165.1	Solyc02g078970.2.1	AT1G10580.1	19629177
AT3G18165.1	Solyc06g065300.2.1	AT1G20960.1	19629177
AT3G18165.1	Solyc06g071620.2.1	AT1G20960.1	19629177
AT3G18165.1	Solyc06g082100.2.1	AT1G20960.1	19629177
AT3G18165.1	Solyc06g043160.1.1	AT1G80070.1	19629177
AT3G18165.1	Solyc07g008880.2.1	AT1G80070.1	19629177
AT3G18165.1	Solyc09g090660.2.1	AT2G33340.1	19629177
AT3G18165.1	Solyc01g068480.2.1	AT2G38770.1	19629177
AT3G18165.1	Solyc03g059100.1.1	AT2G43770.1	19629177
AT3G18165.1	Solyc03g116620.2.1	AT3G15730.1	19629177
AT3G18165.1	Solyc06g068090.2.1	AT3G15730.1	19629177
AT3G18165.1	Solyc05g051070.2.1	AT3G18790.1	19629177
AT3G18165.1	Solyc11g056680.1.1	AT3G20820.1	19629177
AT3G18165.1	Solyc01g088510.2.1	AT3G60190.1	19629177
AT3G18165.1	Solyc10g062160.1.1	AT3G60190.1	19629177
AT3G18165.1	Solyc09g010620.1.1	AT4G15900.1	19629177
AT3G18165.1	Solyc03g044030.1.1	AT5G28740.1	19629177
AT3G18165.1	Solyc03g044040.1.1	AT5G28740.1	19629177
AT3G18165.1	Solyc10g081070.1.1	AT5G64270.1	19629177
AT3G18165.1	Solyc10g081090.1.1	AT5G64270.1	19629177

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
PGSC0003DMT400014424	Potato	nucleus	97.08	92.83
VIT_17s0000g02840.t01	Wine grape	cytosol, mitochondrion, nucleus	57.5	66.67
GSMUA_Achr3P18370_001	Banana	cytosol	39.58	66.43
AT3G18165.1	Thale cress	cytosol	67.5	64.03
CDX95551	Canola	cytosol	66.67	63.24
Bra021297.1-P	Field mustard	cytosol	66.25	62.85
CDX92209	Canola	nucleus	66.25	62.85
Bra022288.1-P	Field mustard	nucleus	66.25	62.85
CDY24431	Canola	nucleus	65.83	62.45
KRH41788	Soybean	nucleus	65.42	62.3
KRH60495	Soybean	endoplasmic reticulum, nucleus	65.42	62.06
CDY24603	Canola	cytosol	22.08	60.23
EES00531	Sorghum	cytosol	62.08	58.66
TraesCS3B01G211300.1	Wheat	cytosol	60.42	56.64
TraesCS3D01G186100.1	Wheat	cytosol	60.0	56.25
TraesCS3A01G181200.1	Wheat	nucleus	59.58	55.86
HORVU3Hr1G037080.1	Barley	plastid	60.0	48.32
Zm00001d040357_P001	Maize	cytosol	62.5	41.55
GSMUA_Achr3P18380_001	Banana	cytosol	27.92	33.17
CDY18500	Canola	cytosol	66.25	26.54

Protein Annotations

MapMan:16.4.5.1.1	ncoils:Coil	GO:GO:0000974	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623
GO:GO:0005634	GO:GO:0005730	GO:GO:0006139	GO:GO:0006397	GO:GO:0006950	GO:GO:0007154
GO:GO:0007165	GO:GO:0008150	GO:GO:0008152	GO:GO:0009605	GO:GO:0009607	GO:GO:0009870
GO:GO:0009987	GO:GO:0010204	GO:GO:0042742	GO:GO:0050832	GO:GO:0071011	GO:GO:0071013
UniProt:K4BM50	PFAM:PF05700	PANTHER:PTHR13296	InterPro:SPF27	EnsemblPlantsGene:Solyc03g119010.2	EnsemblPlants:Solyc03g119010.2.1
UniParc:UPI00027661B9	:	:	:	:	:

Description

Pre-mRNA-splicing factor SPF27 homolog [Source:Projected from Arabidopsis thaliana (AT3G18165) UniProtKB/Swiss-Prot;Acc:Q949S9]

Coordinates

chr3:-:67737488..67739785

Molecular Weight (calculated)

27870.0 Da

IEP (calculated)

5.129

GRAVY (calculated)

-0.875

Length

240 amino acids

Sequence
(BLAST)

001: MATKDGDILM LEAPPEYRPA VSSSAEVIDA LPYIDDDYGD PNVKEEVDRL VEEEMRRSSK KPSDFLKNLP PLRKFNFENH PMLAREYERV RAGKPPVQID
101: TSRYGLEVPP VNKRNDETAW KQSLQKAQRL LQHQVIRLEN LDLMSKHGPD VWKLYNQQLE AFLARMQSQA AELNEMIETA NRERKYHQQT TAYELNALSM
201: QWKELCLKNI EIQSACGELQ DHREQLKKEA EERSGLEFGG

Best Arabidopsis Sequence Match ( AT3G18165.1 )
(BLAST)

001: MATNNGDVLM LEATPEAARP WASAANAEVI DALPYIDDDY GNPLIKSEVD RLVEEEMRRS SKKPADFLKD LPPLPKFDFK NCPVLGKEYE RVRAGKPPVR
101: IDFESRYKLE MPPANKRNDD AAWKQYLQKN QRSLQQKLIE LENLELMSKL GPELWRQNNH RLEVFLTRMQ RLAQEQNEEI EKVNRERKYH QQTTSYELNA
201: LSQEWRQLCV KNMEIQSACA MLETQIDSFK KEAAERGWNL EEKLENVEPL QMQ

Arabidopsis Description

MOS4Pre-mRNA-splicing factor SPF27 homolog [Source:UniProtKB/Swiss-Prot;Acc:Q949S9]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.