Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- nucleus 2
- cytosol 3
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDY24603 | Canola | cytosol | 18.32 | 42.05 |
| TraesCS3B01G211300.1 | Wheat | cytosol | 44.06 | 34.77 |
| EES00531 | Sorghum | cytosol | 43.07 | 34.25 |
| TraesCS3D01G186100.1 | Wheat | cytosol | 43.07 | 33.98 |
| TraesCS3A01G181200.1 | Wheat | nucleus | 43.07 | 33.98 |
| VIT_17s0000g02840.t01 | Wine grape | cytosol, mitochondrion, nucleus | 34.65 | 33.82 |
| KRH41788 | Soybean | nucleus | 37.13 | 29.76 |
| HORVU3Hr1G037080.1 | Barley | plastid | 43.56 | 29.53 |
| KRH60495 | Soybean | endoplasmic reticulum, nucleus | 36.14 | 28.85 |
| PGSC0003DMT400014424 | Potato | nucleus | 35.15 | 28.29 |
| Solyc03g119010.2.1 | Tomato | nucleus | 33.17 | 27.92 |
| AT3G18165.1 | Thale cress | cytosol | 33.17 | 26.48 |
| CDX92209 | Canola | nucleus | 32.67 | 26.09 |
| CDX95551 | Canola | cytosol | 32.67 | 26.09 |
| CDY24431 | Canola | nucleus | 32.67 | 26.09 |
| Bra022288.1-P | Field mustard | nucleus | 32.67 | 26.09 |
| Bra021297.1-P | Field mustard | cytosol | 32.18 | 25.69 |
| Zm00001d040357_P001 | Maize | cytosol | 45.05 | 25.21 |
| GSMUA_Achr3P18370_001 | Banana | cytosol | 10.89 | 15.38 |
| CDY18500 | Canola | cytosol | 32.18 | 10.85 |
Protein Annotations
| EnsemblPlants:GSMUA_Achr3P18380_001 | EnsemblPlants:GSMUA_Achr3T18380_001 | EnsemblPlantsGene:GSMUA_Achr3G18380_001 | GO:GO:0006139 | GO:GO:0006397 | GO:GO:0008150 |
| GO:GO:0008152 | GO:GO:0009987 | InterPro:SPF27 | ncoils:Coil | PANTHER:PTHR13296 | PFAM:PF05700 |
| UniParc:UPI000294BE60 | UniProt:M0SFQ4 | MapMan:16.4.5.1.1 | : | : | : |
Description
Hypothetical protein [Source:GMGC_GENE;Acc:GSMUA_Achr3G18380_001]
Coordinates
chr3:+:19839853..19845678
Molecular Weight (calculated)
23172.7 Da
IEP (calculated)
6.519
GRAVY (calculated)
-0.488
Length
202 amino acids
Sequence
(BLAST)
(BLAST)
001: MADESARPGP RVDVGSLWSA ELVVEVGRAL AMGCRRRGVD QCLSVWTPVS GSSSGRWSTT PRSERSWLED SVMFKRVQFM LGKHASNFYV FLLIIRIENL
101: EMLLNHGAEV WKHQNREMEA YLSRLEATAR EYDKLIEAVN RDRKFQQQNT GGQLNMLNAQ WRELCQKNIE IQAACADLQN HIDQIKLEAK ESGLDLDMKM
201: EN
101: EMLLNHGAEV WKHQNREMEA YLSRLEATAR EYDKLIEAVN RDRKFQQQNT GGQLNMLNAQ WRELCQKNIE IQAACADLQN HIDQIKLEAK ESGLDLDMKM
201: EN
001: MATNNGDVLM LEATPEAARP WASAANAEVI DALPYIDDDY GNPLIKSEVD RLVEEEMRRS SKKPADFLKD LPPLPKFDFK NCPVLGKEYE RVRAGKPPVR
101: IDFESRYKLE MPPANKRNDD AAWKQYLQKN QRSLQQKLIE LENLELMSKL GPELWRQNNH RLEVFLTRMQ RLAQEQNEEI EKVNRERKYH QQTTSYELNA
201: LSQEWRQLCV KNMEIQSACA MLETQIDSFK KEAAERGWNL EEKLENVEPL QMQ
101: IDFESRYKLE MPPANKRNDD AAWKQYLQKN QRSLQQKLIE LENLELMSKL GPELWRQNNH RLEVFLTRMQ RLAQEQNEEI EKVNRERKYH QQTTSYELNA
201: LSQEWRQLCV KNMEIQSACA MLETQIDSFK KEAAERGWNL EEKLENVEPL QMQ
Arabidopsis Description
MOS4Pre-mRNA-splicing factor SPF27 homolog [Source:UniProtKB/Swiss-Prot;Acc:Q949S9]
SUBAcon: [cytosol]
SUBAcon: [cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.