Factsheet for GSMUA_Achr1P04880_001

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 1
cytosol 4
mitochondrion 2

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, mitochondrion, nucleus
BaCelLo:	nucleus
EpiLoc:	cytosol
MultiLoc:	cytosol
Plant-mPloc:	mitochondrion
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	cytosol

PPI

Inferred distinct locusB in Crop

locusB	locations
GSMUA_Achr11P...
GSMUA_Achr1P04880_001
GSMUA_Achr1P18350_001
GSMUA_Achr1P22740_001
GSMUA_Achr1P25170_001
GSMUA_Achr3P01090_001
GSMUA_Achr4P00060_001
GSMUA_Achr4P17470_001
GSMUA_Achr4P20040_001
GSMUA_Achr7P05530_001
GSMUA_Achr7P22530_001
GSMUA_AchrUn_...

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT5G42080.1	GSMUA_Achr1P25170_001	AT1G08560.1	19959995
AT5G42080.1	GSMUA_Achr1P18350_001	AT1G59610.1	20231465
AT5G42080.1	GSMUA_Achr3P01090_001	AT1G59610.1	20231465
AT5G42080.1	GSMUA_Achr4P20040_001	AT1G59610.1	20231465
AT5G42080.1	GSMUA_Achr7P05530_001	AT1G59610.1	20231465
AT5G42080.1	GSMUA_Achr11P...	AT5G13300.1	15923323
AT5G42080.1	GSMUA_Achr4P00060_001	AT5G13300.1	15923323
AT5G42080.1	GSMUA_Achr7P22530_001	AT5G13300.1	15923323
AT5G42080.1	GSMUA_Achr1P22740_001	AT5G35750.1	18642946
AT5G42080.1	GSMUA_Achr4P17470_001	AT5G35750.1	18642946
AT5G42080.1	GSMUA_AchrUn_...	AT5G35750.1	18642946
AT5G42080.1	GSMUA_Achr1P04880_001	AT5G42080.1	19144001
AT5G42080.1	GSMUA_Achr1P04880_001	AT5G42080.1	20231465

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
GSMUA_Achr8P27540_001	Banana	cytosol	90.0	90.15
GSMUA_Achr6P26600_001	Banana	cytosol	88.85	89.0
Solyc05g050600.2.1	Tomato	nucleus, plastid	87.05	87.19
Solyc01g095970.2.1	Tomato	plastid	86.07	86.07
KRH41321	Soybean	endoplasmic reticulum, nucleus	86.07	86.07
KRH60047	Soybean	endoplasmic reticulum	85.9	85.9
VIT_15s0046g00470.t01	Wine grape	cytosol	86.39	85.83
PGSC0003DMT400000646	Potato	cytosol	85.57	85.57
KRH77654	Soybean	endoplasmic reticulum	85.57	85.57
KRH27831	Soybean	cytosol, endoplasmic reticulum, nucleus	85.41	85.41
CDX99702	Canola	cytosol	85.25	85.25
AT5G42080.1	Thale cress	cytosol	85.08	85.08
CDY13364	Canola	cytosol	85.08	85.08
CDX67529	Canola	cytosol	84.92	84.92
Bra028525.1-P	Field mustard	cytosol	84.75	84.75
CDY27661	Canola	cytosol	84.75	84.75
Bra025448.1-P	Field mustard	cytosol	80.82	84.56
KRH47905	Soybean	cytosol, endoplasmic reticulum	83.93	84.07
CDX67862	Canola	cytosol	82.79	82.79
CDY25074	Canola	cytosol	82.79	82.79
AT3G61760.1	Thale cress	cytosol	82.62	82.62
Bra003469.1-P	Field mustard	cytosol	77.38	82.09
KRH06461	Soybean	cytosol	66.72	78.42
GSMUA_Achr2P18210_001	Banana	cytosol	72.3	72.18
GSMUA_Achr11P...	Banana	cytosol	71.15	70.68
GSMUA_Achr2P21630_001	Banana	cytosol	70.16	70.28
GSMUA_Achr7P11190_001	Banana	cytosol	69.51	69.28
GSMUA_AchrUn_...	Banana	cytosol	71.31	69.16
GSMUA_Achr10P...	Banana	cytosol	35.08	27.33
GSMUA_Achr8P19650_001	Banana	cytosol, mitochondrion	21.48	23.52
GSMUA_Achr8P08760_001	Banana	cytosol	29.51	23.38
GSMUA_Achr1P18350_001	Banana	cytosol	27.54	18.79
GSMUA_Achr4P20040_001	Banana	cytosol	27.87	18.5
GSMUA_Achr3P01090_001	Banana	nucleus	27.54	18.3
GSMUA_Achr7P05530_001	Banana	nucleus	27.38	18.13
GSMUA_Achr2P09480_001	Banana	plastid	21.15	15.77
GSMUA_Achr10P...	Banana	cytosol	16.56	14.87

Protein Annotations

Gene3D:1.20.120.1240	MapMan:22.1.7.1	Gene3D:3.40.50.300	ncoils:Coil	InterPro:Dynamin_GTPase	InterPro:Dynamin_GTPase_CS
InterPro:Dynamin_SF	InterPro:Dynamin_central	InterPro:GED	InterPro:GED_dom	GO:GO:0000166	GO:GO:0003674
GO:GO:0003824	GO:GO:0003924	GO:GO:0005488	GO:GO:0005525	GO:GO:0016787	EnsemblPlantsGene:GSMUA_Achr1G04880_001
EnsemblPlants:GSMUA_Achr1P04880_001	EnsemblPlants:GSMUA_Achr1T04880_001	InterPro:G_DYNAMIN_dom	InterPro:IPR020850	InterPro:IPR030381	UniProt:M0RX46
InterPro:P-loop_NTPase	PFAM:PF00350	PFAM:PF01031	PFAM:PF02212	PRINTS:PR00195	ScanProsite:PS00410
PFscan:PS51388	PFscan:PS51718	PANTHER:PTHR11566	PANTHER:PTHR11566:SF60	SMART:SM00053	SMART:SM00302
SUPFAM:SSF52540	UniParc:UPI00029483FD	SEG:seg	:	:	:

Description

Dynamin-related protein 5A [Source:GMGC_GENE;Acc:GSMUA_Achr1G04880_001]

Coordinates

chr1:+:4041150..4057230

Molecular Weight (calculated)

68499.5 Da

IEP (calculated)

7.669

GRAVY (calculated)

-0.355

Length

610 amino acids

Sequence
(BLAST)

001: MENLISLVNN IQRACTALGD HGEESALPTL WDSLPAIAVV GGQSSGKSSV LESIVGKDFL PRGSGIVTRR PLVLQLHKID EGREYAEFMH LPKKKFTDFA
101: QVRKEIEDET DRETGRSKQI SSVPIHLSIF SPNVVNLTLV DLPGLTKVAV EGQPESIVTD IENMVRAYIE KPNCIILAIS PANQDLATSD AIKISREVDP
201: KGERTFGVLT KIDLMDKGTN AVDILEGKSY KLQFPWIGVV NRSQADINKN VDMIAARNRE REYFANTPEY KHLVNRMGSE HLAKMMSKHL EQVIKSRIPG
301: IQSLISKTIT ELEMELSRLG KPIAADTGGK LYAIMEICRV FDQNYKEHLD GMRPGGEKIY NVFDSQLPAA LKRLQFDKHL SMENVRKTVT EADGYQPHLI
401: APEQGYRRLI ESSVVSIRGP AESAVDSVHA ILKDLVHKAI NETHELKQYP TLRVEVGNAA VESLERMREE SKKATLKLVD MECSYLTVDF FRKLPQDVEK
501: GGNPTHSLFD RYNDSYLRRV GTTVLAYVNM VCASLRNSIP KSIVYCQVRE AKRSLLDHFF TDLGKREGKQ LGKLLDEDPA IMERRTALAK RLELYRSAQA
601: EIDSVAWANK

Best Arabidopsis Sequence Match ( AT5G42080.1 )
(BLAST)

001: MENLISLVNK IQRACTALGD HGDSSALPTL WDSLPAIAVV GGQSSGKSSV LESIVGKDFL PRGSGIVTRR PLVLQLQKID DGTREYAEFL HLPRKKFTDF
101: AAVRKEIQDE TDRETGRSKA ISSVPIHLSI YSPNVVNLTL IDLPGLTKVA VDGQSDSIVK DIENMVRSYI EKPNCIILAI SPANQDLATS DAIKISREVD
201: PSGDRTFGVL TKIDLMDKGT DAVEILEGRS FKLKYPWVGV VNRSQADINK NVDMIAARKR EREYFSNTTE YRHLANKMGS EHLAKMLSKH LERVIKSRIP
301: GIQSLINKTV LELETELSRL GKPIAADAGG KLYSIMEICR LFDQIFKEHL DGVRAGGEKV YNVFDNQLPA ALKRLQFDKQ LAMDNIRKLV TEADGYQPHL
401: IAPEQGYRRL IESSIVSIRG PAEASVDTVH AILKDLVHKS VNETVELKQY PALRVEVTNA AIESLDKMRE GSKKATLQLV DMECSYLTVD FFRKLPQDVE
501: KGGNPTHSIF DRYNDSYLRR IGSNVLSYVN MVCAGLRNSI PKSIVYCQVR EAKRSLLDHF FAELGTMDMK RLSSLLNEDP AIMERRSAIS KRLELYRAAQ
601: SEIDAVAWSK

Arabidopsis Description

DRP1ARSW9 [Source:UniProtKB/TrEMBL;Acc:A0A178UEJ4]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.