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Soybean
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Soybean
Subcellular Localization
min:
: max

 
Winner_takes_all: nucleus, endoplasmic reticulum

Predictor Summary:
  • nucleus 1
  • cytosol 4
  • mitochondrion 2
Predictors GFP MS/MS Papers
Winner Takes All:endoplasmic reticulum, nucleus
Any Predictor:cytosol, mitochondrion, nucleus
BaCelLo:nucleus
EpiLoc:cytosol
MultiLoc:cytosol
Plant-mPloc:mitochondrion
PProwler:mitochondrion
WoLF PSORT:cytosol
YLoc:cytosol
 nucleus: 21132161
endoplasmic reticulum: 23041469
endoplasmic reticulum: 27224218
nucleus: 27291164
msms PMID: 21132161 doi
B Cooper, KB Campbell, J Feng, WM Garrett, R Frederick
Soybean Genomics and Improvement Laboratory, USDA-ARS, Beltsville, MD 20705, USA. bret.cooper@ars.usda.gov
msms PMID: 23041469 doi
S Komatsu, R Kuji, Y Nanjo, S Hiraga, K Furukawa
National Institute of Crop Science, Tsukuba 305-8518, Japan. skomatsu@affrc.go.jp
msms PMID: 27291164 doi
X Yin, S Komatsu
Graduate School of Life and Environmental Sciences, University of Tsukuba , Tsukuba 305-8572, Japan., National Institute of Crop Science, National Agriculture and Food Research Organization , Tsukuba 305-8518, Japan.
msms PMID: 27224218 doi
X Wang, S Komatsu
Graduate School of Life and Environmental Sciences, University of Tsukuba , Tsukuba 305-8572, Japan., National Institute of Crop Science, National Agriculture and Food Research Organization , Tsukuba 305-8518, Japan.
PPI

Inferred distinct locusB in Crop

locusBlocations
KRH01512
KRH08461
KRH14106
KRH27552
KRH27831
KRH36411
KRH41321
KRH45201
KRH60047
KRH70119
KRH74010
KRH77654

Inferred from Arabidopsis experimental PPI

Ath locusAlocusBAth locusBPaper
AT5G42080.1 KRH08461 AT1G08560.1 19959995
AT5G42080.1 KRH70119 AT1G08560.1 19959995
AT5G42080.1 KRH27552 AT1G59610.1 20231465
AT5G42080.1 KRH36411 AT1G59610.1 20231465
AT5G42080.1 KRH01512 AT5G13300.1 15923323
AT5G42080.1 KRH45201 AT5G13300.1 15923323
AT5G42080.1 KRH14106 AT5G35750.1 18642946
AT5G42080.1 KRH74010 AT5G35750.1 18642946
AT5G42080.1 KRH27831 AT5G42080.1 19144001
AT5G42080.1 KRH41321 AT5G42080.1 19144001
AT5G42080.1 KRH60047 AT5G42080.1 19144001
AT5G42080.1 KRH77654 AT5G42080.1 19144001
AT5G42080.1 KRH27831 AT5G42080.1 20231465
AT5G42080.1 KRH41321 AT5G42080.1 20231465
AT5G42080.1 KRH60047 AT5G42080.1 20231465
AT5G42080.1 KRH77654 AT5G42080.1 20231465
Homology

Paralog

locusIdentityHomology Identity

Ortholog

locusHomology SpeciesLocationIdentityHomology Identity
KRH60047 Soybean endoplasmic reticulum 99.02 99.02
KRH77654 Soybean endoplasmic reticulum 92.95 92.95
KRH27831 Soybean cytosol, endoplasmic reticulum, nucleus 92.3 92.3
Os05t0556100-01 Rice plasma membrane 86.39 86.54
AT5G42080.1 Thale cress cytosol 86.39 86.39
CDX67529 Canola cytosol 86.39 86.39
CDY13364 Canola cytosol 86.23 86.23
Bra028525.1-P Field mustard cytosol 86.23 86.23
EES19921 Sorghum cytosol 86.07 86.21
GSMUA_Achr1P04880_001 Banana cytosol 86.07 86.07
CDY27661 Canola cytosol 85.9 85.9
CDX99702 Canola cytosol 85.74 85.74
Bra025448.1-P Field mustard cytosol 81.8 85.59
TraesCS1D01G393000.2 Wheat cytosol 84.92 85.06
TraesCS1A01G385400.2 Wheat cytosol, golgi, nucleus, unclear 84.92 85.06
TraesCS1B01G411700.3 Wheat cytosol 84.75 84.89
EES01270 Sorghum cytosol 83.28 83.42
KRH47905 Soybean cytosol, endoplasmic reticulum 82.79 82.92
Os01t0681100-01 Rice cytosol, plasma membrane 24.59 81.52
Zm00001d009504_P002 Maize cytosol 85.41 79.42
Zm00001d038955_P001 Maize cytosol, mitochondrion, plasma membrane 85.9 78.21
KRH06461 Soybean cytosol 66.07 77.65
HORVU1Hr1G084970.2 Barley plasma membrane 84.59 76.33
KRH46533 Soybean cytosol, endoplasmic reticulum, nucleus 68.69 68.02
KRH48908 Soybean cytosol, nucleus 68.69 67.8
KRH04285 Soybean cytosol 67.7 67.48
KRH41722 Soybean endoplasmic reticulum, nucleus 68.2 67.42
KRH60421 Soybean endoplasmic reticulum 68.2 67.42
KRH66384 Soybean cytosol, endoplasmic reticulum 67.7 66.83
KRH49665 Soybean endoplasmic reticulum 67.54 66.67
KRH70357 Soybean endoplasmic reticulum, nucleus 67.05 66.18
TraesCS6B01G443600.1 Wheat cytosol 40.98 47.8
TraesCS6D01G385300.1 Wheat cytosol 36.39 44.85
KRH10618 Soybean plastid 36.56 27.1
KRH49844 Soybean plastid 36.07 27.09
KRH21736 Soybean nucleus 36.56 27.0
KRH42074 Soybean endoplasmic reticulum, nucleus 35.9 26.9
KRH62781 Soybean nucleus 35.74 26.68
KRH21193 Soybean cytosol 20.82 25.6
KRH42928 Soybean cytosol 23.93 24.37
KRH59040 Soybean cytosol 26.39 23.85
KRH21190 Soybean cytosol 25.08 23.01
KRH11082 Soybean cytosol 5.25 21.92
KRH27552 Soybean cytosol 28.85 19.09
KRH36411 Soybean endoplasmic reticulum, nucleus 28.85 19.09
KRH51295 Soybean endoplasmic reticulum 26.56 17.72
KRH01870 Soybean endoplasmic reticulum 26.56 17.72
KRH55251 Soybean plastid 22.95 17.61
KRH26094 Soybean plastid 22.79 17.29
KRH42202 Soybean nucleus 19.18 15.58
KRH58326 Soybean plasma membrane 8.2 10.02
Protein Annotations
Gene3D:1.20.120.1240EntrezGene:100037461MapMan:22.1.7.1Gene3D:3.40.50.300UniProt:A0A0R0ILF6InterPro:Dynamin_GTPase
InterPro:Dynamin_GTPase_CSInterPro:Dynamin_SFInterPro:Dynamin_centralInterPro:GEDInterPro:GED_domEnsemblPlantsGene:GLYMA_08G023300
GO:GO:0000166GO:GO:0000266GO:GO:0003674GO:GO:0003824GO:GO:0003924GO:GO:0005488
GO:GO:0005515GO:GO:0005525GO:GO:0005575GO:GO:0005622GO:GO:0005623GO:GO:0005737
GO:GO:0005856GO:GO:0005874GO:GO:0007049GO:GO:0008017GO:GO:0008150GO:GO:0009524
GO:GO:0009987GO:GO:0016043GO:GO:0016787GO:GO:0051301InterPro:G_DYNAMIN_domInterPro:IPR020850
InterPro:IPR030381EnsemblPlants:KRH41321ProteinID:KRH41321ProteinID:KRH41321.1InterPro:P-loop_NTPasePFAM:PF00350
PFAM:PF01031PFAM:PF02212PRINTS:PR00195ScanProsite:PS00410PFscan:PS51388PFscan:PS51718
PANTHER:PTHR11566PANTHER:PTHR11566:SF58UniProt:Q39828SMART:SM00053SMART:SM00302SUPFAM:SSF52540
EMBL:U36430UniParc:UPI00000A40E7SEG:seg:::
Description
hypothetical protein
Coordinates
chr8:+:1861385..1867843
Molecular Weight (calculated)
68332.5 Da
IEP (calculated)
8.128
GRAVY (calculated)
-0.293
Length
610 amino acids
Sequence
(BLAST)
001: MENLISLVNK IQRACTALGD HGENSALPTL WDSLPAIAVV GGQSSGKSSV LESVVGKDFL PRGSGIVTRR PLVLQLHKIE EGSREYAEFL HLPRKRFTDF
101: VAVRKEIQDE TDRETGRTKQ ISTVPIHLSI YSPNVVNLTL VDLPGLTKVA VEGQPDSIVK DIEDMVRSYI EKPNCIILAI SPANQDLATS DAIKISREVD
201: PTGDRTIGVL TKIDLMDKGT DAVDILEGRA YRLKFPWIGV VNRSQQDINK NVDMIAARRR EREYFNSTPE YKHLANRMGS EHLAKMLSKH LETVIKSKIP
301: GIQSLINKTI AELEAELTRL GKPVAADAGG KLYAIMEICR SFDQIFKDHL DGVRPGGDKI YNVFDNQLPA ALKRLQFDKQ LSMENIRKLI TEADGYQPHL
401: IAPEQGYRRL IESSLITIRG PAEAAVDAVH SLLKDLVHKA ISETLDLKQY PGLRVEVGAA AVDSLERMRD ESKRATLQLV DMECGYLTVD FFRKLPQDVD
501: KGGNPTHSIF DRYNDSYLRR IGTTILSYVN MVCATLRNSI PKSIVYCQVR EAKRSLLDHF FTELGKMETK RLSSLLNEDP AIMERRSALA KRLELYRSAQ
601: AEIDAVAWSK
Best Arabidopsis Sequence Match ( AT5G42080.1 )
(BLAST)
001: MENLISLVNK IQRACTALGD HGDSSALPTL WDSLPAIAVV GGQSSGKSSV LESIVGKDFL PRGSGIVTRR PLVLQLQKID DGTREYAEFL HLPRKKFTDF
101: AAVRKEIQDE TDRETGRSKA ISSVPIHLSI YSPNVVNLTL IDLPGLTKVA VDGQSDSIVK DIENMVRSYI EKPNCIILAI SPANQDLATS DAIKISREVD
201: PSGDRTFGVL TKIDLMDKGT DAVEILEGRS FKLKYPWVGV VNRSQADINK NVDMIAARKR EREYFSNTTE YRHLANKMGS EHLAKMLSKH LERVIKSRIP
301: GIQSLINKTV LELETELSRL GKPIAADAGG KLYSIMEICR LFDQIFKEHL DGVRAGGEKV YNVFDNQLPA ALKRLQFDKQ LAMDNIRKLV TEADGYQPHL
401: IAPEQGYRRL IESSIVSIRG PAEASVDTVH AILKDLVHKS VNETVELKQY PALRVEVTNA AIESLDKMRE GSKKATLQLV DMECSYLTVD FFRKLPQDVE
501: KGGNPTHSIF DRYNDSYLRR IGSNVLSYVN MVCAGLRNSI PKSIVYCQVR EAKRSLLDHF FAELGTMDMK RLSSLLNEDP AIMERRSAIS KRLELYRAAQ
601: SEIDAVAWSK
Arabidopsis Description
DRP1ARSW9 [Source:UniProtKB/TrEMBL;Acc:A0A178UEJ4]
SUBAcon: [cytosol]
Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.