CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 2
plastid 3
cytosol 2
mitochondrion 1

Predictors

GFP

MS/MS

Papers

nucleus: 21132161
endoplasmic reticulum: 27224218

msms PMID: 21132161 doi

B Cooper, KB Campbell, J Feng, WM Garrett, R Frederick

Soybean Genomics and Improvement Laboratory, USDA-ARS, Beltsville, MD 20705, USA. bret.cooper@ars.usda.gov

msms PMID: 27224218 doi

X Wang, S Komatsu

Graduate School of Life and Environmental Sciences, University of Tsukuba , Tsukuba 305-8572, Japan., National Institute of Crop Science, National Agriculture and Food Research Organization , Tsukuba 305-8518, Japan.

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH21736	Soybean	nucleus	88.13	87.17
KRH10618	Soybean	plastid	87.64	87.0
KRH49844	Soybean	plastid	82.37	82.88
KRH42074	Soybean	endoplasmic reticulum, nucleus	82.01	82.31
Solyc11g043200.1.1	Tomato	cytosol, nucleus	21.18	75.55
VIT_03s0038g00970.t01	Wine grape	cytosol	75.52	73.89
CDY46101	Canola	cytosol	68.79	69.99
Bra036991.1-P	Field mustard	cytosol	68.67	69.52
Bra011458.1-P	Field mustard	cytosol	68.18	69.02
CDX68994	Canola	cytosol	68.18	68.51
AT4G33650.2	Thale cress	cytosol	66.95	67.61
CDX72418	Canola	cytosol	68.67	67.51
CDY48440	Canola	cytosol	66.34	67.16
Bra034579.1-P	Field mustard	cytosol	66.34	67.16
CDY28314	Canola	cytosol	66.22	67.12
CDX75370	Canola	cytosol	68.05	66.19
Os01t0920400-01	Rice	nucleus, plastid	66.22	66.14
Zm00001d042338_P002	Maize	extracellular, mitochondrion	65.61	65.61
AT2G14120.3	Thale cress	cytosol, plastid	64.38	65.02
GSMUA_Achr8P08760_001	Banana	cytosol	61.2	64.94
GSMUA_Achr10P...	Banana	cytosol	62.18	64.88
EES04116	Sorghum	cytosol	64.99	64.84
TraesCS3B01G465100.3	Wheat	cytosol, plastid	63.4	64.43
TraesCS3D01G423500.1	Wheat	cytosol	64.14	64.29
TraesCS3A01G428000.2	Wheat	cytosol, plastid	62.91	64.25
HORVU3Hr1G094260.4	Barley	cytosol	63.4	63.56
Zm00001d012027_P002	Maize	cytosol	65.61	63.06
TraesCS2A01G281000.2	Wheat	cytosol	57.53	60.65
TraesCS5D01G082000.4	Wheat	cytosol	50.55	60.29
TraesCS2D01G279900.2	Wheat	cytosol	57.16	60.18
TraesCS2B01G298400.1	Wheat	cytosol	57.41	60.13
Os04t0381000-01	Rice	cytosol	59.0	59.36
OQU81360	Sorghum	cytosol	54.83	59.26
HORVU2Hr1G068810.3	Barley	cytosol	57.28	58.79
Zm00001d004012_P001	Maize	cytosol	49.94	37.29
KRH46533	Soybean	cytosol, endoplasmic reticulum, nucleus	27.17	36.04
KRH41321	Soybean	endoplasmic reticulum, nucleus	26.68	35.74
KRH27831	Soybean	cytosol, endoplasmic reticulum, nucleus	26.56	35.57
KRH41722	Soybean	endoplasmic reticulum, nucleus	26.81	35.49
KRH48908	Soybean	cytosol, nucleus	26.81	35.44
KRH60047	Soybean	endoplasmic reticulum	26.44	35.41
KRH60421	Soybean	endoplasmic reticulum	26.68	35.33
KRH04285	Soybean	cytosol	26.44	35.29
KRH66384	Soybean	cytosol, endoplasmic reticulum	26.68	35.28
KRH77654	Soybean	endoplasmic reticulum	26.19	35.08
KRH47905	Soybean	cytosol, endoplasmic reticulum	25.83	34.65
KRH70357	Soybean	endoplasmic reticulum, nucleus	25.7	33.98
KRH49665	Soybean	endoplasmic reticulum	25.58	33.82
KRH06461	Soybean	cytosol	19.83	31.21
KRH21193	Soybean	cytosol	16.77	27.62
KRH42928	Soybean	cytosol	18.6	25.38
KRH59040	Soybean	cytosol	20.81	25.19
KRH11082	Soybean	cytosol	4.41	24.66
KRH21190	Soybean	cytosol	19.83	24.36
KRH36411	Soybean	endoplasmic reticulum, nucleus	19.09	16.92
KRH51295	Soybean	endoplasmic reticulum	18.73	16.74
KRH01870	Soybean	endoplasmic reticulum	18.73	16.74
KRH27552	Soybean	cytosol	18.73	16.59
KRH42202	Soybean	nucleus	15.06	16.38
KRH55251	Soybean	plastid	14.69	15.09
KRH26094	Soybean	plastid	14.69	14.93
KRH58326	Soybean	plasma membrane	6.98	11.42

Protein Annotations

Gene3D:1.20.120.1240	EntrezGene:100776709	MapMan:13.6.2.1	Gene3D:2.30.29.30	Gene3D:3.40.50.300	EMBL:ACUP02002358
ncoils:Coil	InterPro:Dynamin_GTPase	InterPro:Dynamin_SF	InterPro:Dynamin_central	InterPro:GED	InterPro:GED_dom
EnsemblPlantsGene:GLYMA_04G131700	GO:GO:0000166	GO:GO:0000266	GO:GO:0003674	GO:GO:0003824	GO:GO:0003924
GO:GO:0005488	GO:GO:0005515	GO:GO:0005525	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623
GO:GO:0005737	GO:GO:0008017	GO:GO:0008150	GO:GO:0009987	GO:GO:0016043	GO:GO:0016787
InterPro:G_DYNAMIN_dom	UniProt:I1JW11	InterPro:IPR011993	InterPro:IPR020850	InterPro:IPR030381	EnsemblPlants:KRH62781
ProteinID:KRH62781	ProteinID:KRH62781.1	InterPro:P-loop_NTPase	PFAM:PF00350	PFAM:PF01031	PFAM:PF02212
InterPro:PH-like_dom_sf	PRINTS:PR00195	PFscan:PS51388	PFscan:PS51718	PANTHER:PTHR11566	PANTHER:PTHR11566:SF62
SMART:SM00053	SMART:SM00302	SUPFAM:SSF52540	UniParc:UPI0002339DAA	SEG:seg	:

Description

hypothetical protein

Coordinates

chr4:+:18600348..18610726

Molecular Weight (calculated)

89905.6 Da

IEP (calculated)

6.228

GRAVY (calculated)

-0.199

Length

817 amino acids

Sequence
(BLAST)

001: MAEDIPSSSP PIAASDTAPL GSSVISLVNR LQDIFARVGS QSTIDLPQVA VVGSQSSGKS SVLEALVGRD FLPRGNEICT RRPLVLQLVQ TKAPEDDEYG
101: EFLHFPGRKF HDFSEIRREI QIETDREAGG NKGVSDKQIR LKIFSPNVLD ITLVDLPGIT KVPVGDQPSD IEARIRTMIM SYIKTPTCLI LAVTPANSDL
201: ANSDALQMAG IADPDGNRTI GVITKLDIMD RGTDARNLLL GKVIPLRLGY VGVVNRCQED IQMNRSIKDA LAAEEKFFCS RSVYNSLADS CGIPQLAKRL
301: NQILAQHIMA VLPGLRARIS TSLVAVAKEY ASYGEITESK AGQAALLLNI LSKYCEAFSS MVEGNNEEIS TSELFGGARI HYIFQSIFVR SLEEVDPCED
401: LTDDDIRTAI QNATGPKSAV FAPSVPFKVL VRRQISCLLD PSLQCARFIY DELIKISHRC MVIDLQRFPF LWKRMDEALG NFLREGLEAL ENMIAHLIAM
501: ELNYINTSHH NFIGGSKALE IASQQTKSSM VSIPVSRQKE VLESDKGSVS ERSVKSRAIL ARQANGVVTE PGVHAASDAE KVVSSGNTGG SSWGISSIFG
601: GGDSHTIVKE NVASKPHTEP VHSVEQSFSM IHLREPPPVL RSSESYSETE AIDITVTKLL LRSYYDIVRK NVEDLVPKAI MYFLVDKAKG ELHNVFIKKL
701: YRDNLFEEML REPDEIALKR KRCRELLRAY QQAFKDLEEL PLEADTVERG YGLPEKTGLP KINGLPTSSM YSASSSGDYY AAFSKYPKSK KSSHSGELQS
801: PLHADADSNG SGRPLYI

Best Arabidopsis Sequence Match ( AT2G14120.1 )
(BLAST)

001: MSVDDLPPSS ASAVTPLGSS VIPIVNKLQD IFAQLGSQST IALPQVAVVG SQSSGKSSVL EALVGRDFLP RGNDICTRRP LRLQLVQTKP SSDGGSDEEW
101: GEFLHHDPVR RIYDFSEIRR EIEAETNRVS GENKGVSDIP IGLKIFSPNV LDISLVDLPG ITKVPVGDQP SDIEARIRTM ILTYIKEPSC LILAVSPANT
201: DLANSDALQI AGNADPDGHR TIGVITKLDI MDRGTDARNH LLGKTIPLRL GYVGVVNRSQ EDILMNRSIK DALVAEEKFF RSRPVYSGLT DRLGVPQLAK
301: KLNQVLVQHI KALLPSLKSR INNALFATAK EYESYGDITE SRGGQGALLL SFITKYCEAY SSTLEGKSKE MSTSELSGGA RILYIFQSVF VKSLEEVDPC
401: EDLTADDIRT AIQNATGPRS ALFVPDVPFE VLVRRQISRL LDPSLQCARF IFDELVKISH QCMMKELQRF PVLQKRMDEV IGNFLREGLE PSQAMIRDLI
501: EMEMDYINTS HPNFIGGTKA VEQAMQTVKS SRIPHPVARP RDTVEPERTA SSGSQIKTRS FLGRQANGII TDQAVPTAAD AERPAPAGST SWSGFSSIFR
601: GSDGQAAAKN NLLNKPFSET TQEVYQNLST IYLKEPPTIL KSSETHSEQE SVEIEITKLL LKSYYDIVRK NVEDLVPKAI MHFLVNYTKR ELHNVFIEKL
701: YRENLIEELL KEPDELAIKR KRTQETLRIL QQANRTLDEL PLEAESVERG YKIGSEAKHE ELPGTRRSRT ETNGNGRLHM

Arabidopsis Description

DRP3BDynamin related protein [Source:UniProtKB/TrEMBL;Acc:F4IFG2]
SUBAcon: [plastid,cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.