CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: nucleus, cytosol

Predictor Summary:

plastid 1
cytosol 4
mitochondrion 2

Predictors

GFP

MS/MS

Papers

nucleus: 21132161

msms PMID: 21132161 doi

B Cooper, KB Campbell, J Feng, WM Garrett, R Frederick

Soybean Genomics and Improvement Laboratory, USDA-ARS, Beltsville, MD 20705, USA. bret.cooper@ars.usda.gov

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH66384	Soybean	cytosol, endoplasmic reticulum	96.93	96.93
KRH46533	Soybean	cytosol, endoplasmic reticulum, nucleus	87.38	87.66
VIT_15s0021g00480.t01	Wine grape	cytosol	87.38	87.24
GSMUA_Achr2P18210_001	Banana	cytosol	84.63	85.6
GSMUA_Achr11P...	Banana	cytosol	84.3	84.85
PGSC0003DMT400004319	Potato	cytosol	83.66	84.2
Solyc01g088510.2.1	Tomato	nucleus	69.74	84.18
GSMUA_AchrUn_...	Banana	cytosol	83.33	81.88
PGSC0003DMT400028286	Potato	cytosol	81.07	81.86
Os10t0567800-01	Rice	plasma membrane	81.72	81.72
Solyc10g062160.1.1	Tomato	plastid	77.02	81.37
AT3G60190.1	Thale cress	cytosol	81.39	80.61
CDY42672	Canola	cytosol	80.74	79.84
CDY41188	Canola	cytosol	80.58	79.68
CDX71832	Canola	cytosol	80.58	79.68
CDX89053	Canola	cytosol	80.58	79.55
Bra014507.1-P	Field mustard	cytosol	80.58	79.55
Bra007513.1-P	Field mustard	cytosol	80.42	79.52
KXG38886	Sorghum	cytosol	80.91	79.37
Zm00001d030005_P002	Maize	cytosol, mitochondrion	51.62	79.35
TraesCS1A01G213900.2	Wheat	cytosol	79.45	78.56
TraesCS1B01G227700.1	Wheat	cytosol	79.29	78.4
TraesCS1D01G216700.2	Wheat	cytosol	79.29	78.4
PGSC0003DMT400004228	Potato	cytosol	35.76	78.09
KRH60421	Soybean	endoplasmic reticulum	77.83	77.96
KRH41722	Soybean	endoplasmic reticulum, nucleus	77.67	77.8
Os09t0572900-01	Rice	cytosol, plasma membrane	78.16	77.16
KRH04285	Soybean	cytosol	76.38	77.12
KRH49665	Soybean	endoplasmic reticulum	76.21	76.21
CDY30477	Canola	cytosol	75.89	75.89
CDY23444	Canola	cytosol	75.89	75.89
KRH70357	Soybean	endoplasmic reticulum, nucleus	75.73	75.73
Bra037643.1-P	Field mustard	cytosol	75.57	75.57
EER98546	Sorghum	cytosol	76.21	75.48
Zm00001d005306_P002	Maize	cytosol, extracellular, mitochondrion	76.05	74.84
AT2G44590.3	Thale cress	cytosol	73.79	74.51
HORVU1Hr1G054560.1	Barley	mitochondrion	78.48	70.49
KRH47905	Soybean	cytosol, endoplasmic reticulum	68.61	69.62
KRH60047	Soybean	endoplasmic reticulum	67.8	68.69
KRH41321	Soybean	endoplasmic reticulum, nucleus	67.8	68.69
KRH27831	Soybean	cytosol, endoplasmic reticulum, nucleus	67.48	68.36
KRH77654	Soybean	endoplasmic reticulum	67.31	68.2
KRH06461	Soybean	cytosol	53.88	64.16
KRH10618	Soybean	plastid	36.57	27.46
KRH21736	Soybean	nucleus	36.41	27.24
KRH49844	Soybean	plastid	35.6	27.09
KRH42074	Soybean	endoplasmic reticulum, nucleus	35.6	27.03
KRH62781	Soybean	nucleus	35.44	26.81
KRH21193	Soybean	cytosol	19.9	24.8
KRH42928	Soybean	cytosol	22.98	23.71
KRH59040	Soybean	cytosol	25.24	23.11
KRH21190	Soybean	cytosol	24.27	22.56
KRH11082	Soybean	cytosol	5.18	21.92
KRH36411	Soybean	endoplasmic reticulum, nucleus	29.94	20.07
KRH51295	Soybean	endoplasmic reticulum	29.45	19.91
KRH27552	Soybean	cytosol	29.61	19.85
KRH01870	Soybean	endoplasmic reticulum	28.96	19.58
KRH55251	Soybean	plastid	21.36	16.6
KRH26094	Soybean	plastid	20.87	16.04
KRH42202	Soybean	nucleus	19.42	15.98
KRH58326	Soybean	plasma membrane	7.93	9.82

Protein Annotations

Gene3D:1.20.120.1240	EntrezGene:100790977	MapMan:22.1.7.1	Gene3D:3.40.50.300	EMBL:ACUP02004312	InterPro:Dynamin_GTPase
InterPro:Dynamin_GTPase_CS	InterPro:Dynamin_SF	InterPro:Dynamin_central	InterPro:GED	InterPro:GED_dom	EnsemblPlantsGene:GLYMA_07G120900
GO:GO:0000166	GO:GO:0000266	GO:GO:0003674	GO:GO:0003824	GO:GO:0003924	GO:GO:0005488
GO:GO:0005515	GO:GO:0005525	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005737
GO:GO:0008017	GO:GO:0008150	GO:GO:0009987	GO:GO:0016043	GO:GO:0016787	InterPro:G_DYNAMIN_dom
UniProt:I1KJE0	InterPro:IPR020850	InterPro:IPR030381	EnsemblPlants:KRH48908	ProteinID:KRH48908	ProteinID:KRH48908.1
InterPro:P-loop_NTPase	PFAM:PF00350	PFAM:PF01031	PFAM:PF02212	PRINTS:PR00195	ScanProsite:PS00410
PFscan:PS51388	PFscan:PS51718	PANTHER:PTHR11566	PANTHER:PTHR11566:SF73	SMART:SM00053	SMART:SM00302
SUPFAM:SSF52540	UniParc:UPI0002338935	SEG:seg	:	:	:

Description

hypothetical protein

Coordinates

chr7:+:14011318..14018825

Molecular Weight (calculated)

69171.9 Da

IEP (calculated)

7.668

GRAVY (calculated)

-0.334

Length

618 amino acids

Sequence
(BLAST)

001: MTSMESLIGL VNRIQQACTV LGDYGAADNS AFSSLWEALP SVAVVGGQSS GKSSVLESIV GRDFLPRGSG IVTRRPLVLQ LHKVDGRAKE YAEFLHMPGQ
101: KITDYAFVRQ EIQNETDRVT GRTKQISPVP IHLSIYSPHV VNLTLIDLPG LTKVAVEGQP ETIAQDIENM VRSFVEKPNC IILAISPANQ DIATSDAIKL
201: SREVDPSGER TFGVLTKLDL MDKGTNALDV LEGRSYRLQH PWVGVVNRSQ ADINKNVDMI VARRKESEYF ETSPDYGHLA NKMGSVYLAK LLSQHLESVI
301: RARIPNITSL INKTIEELES EMNQIGRPIA ADAGAQLYTI LELCRAFDRI FKEHLDGGRP GGDRIYNVFD NQLPAALRKL PFDRHLSLQN VRKVVSEADG
401: YQPHLIAPEQ GYRRLIEGAL GYFRGPAEAS VDAVHFVLKE LVRKSIAETQ ELRRFPTLQA EIAAGTNEAL ERFREESKKT VIRLVDMEAS YLTVEFFRKL
501: PQEMEKAGNP ANQPTPNVDR YGEGHYRRIG SNVSSYIGMV SDTLRNTIPK AVVYCQVREA KLSLLNHFYT QIGKKEAKQL SQLLDENPAL MERRQQCAKR
601: LELYKAARDE IDSVSWAR

Best Arabidopsis Sequence Match ( AT3G60190.1 )
(BLAST)

001: MTTMESLIGL VNRIQRACTV LGDYGGGTGS NAFNSLWEAL PTVAVVGGQS SGKSSVLESI VGRDFLPRGS GIVTRRPLVL QLHKTDDGTE EYAEFLHLPK
101: KQFTDFALVR REIQDETDRI TGKNKQISPV PIHLSIYSPN VVNLTLIDLP GLTKVAVEGQ PETIAEDIES MVRTYVDKPN CIILAISPAN QDIATSDAIK
201: LAKDVDPTGE RTFGVLTKLD LMDKGTNALE VLEGRSYRLQ HPWVGIVNRS QADINKNVDM MLARRKEREY FDTSPDYGHL ASKMGSEYLA KLLSKHLESV
301: IRTRIPSILS LINKSIEELE RELDRMGRPV AVDAGAQLYT ILEMCRAFDK IFKEHLDGGR PGGDRIYGVF DNQLPAALKK LPFDRHLSLQ SVKKIVSEAD
401: GYQPHLIAPE QGYRRLIEGA LGYFRGPAEA SVDAVHYVLK ELVRKSISET EELKRFPSLQ VELAAAANSS LEKFREESKK SVIRLVDMES AYLTAEFFRK
501: LPQEIERPVT NSKNQTASPS SATLDQYGDG HFRRIASNVS AYVNMVSDTL RNTIPKACVY CQVRQAKLAL LNYFYSQISK REGKQLGQLL DEDPALMDRR
601: LECAKRLELY KKARDEIDAV AWVR

Arabidopsis Description

DRP1EDynamin-related protein 1E [Source:UniProtKB/Swiss-Prot;Acc:Q9FNX5]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.