CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 1
cytosol 3
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, mitochondrion, nucleus
BaCelLo:	nucleus
MultiLoc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Zm00001d030005_P002	Maize	cytosol, mitochondrion	63.02	98.76
Os10t0567800-01	Rice	plasma membrane	91.11	92.88
TraesCS1A01G213900.2	Wheat	cytosol	86.67	87.36
TraesCS1D01G216700.2	Wheat	cytosol	86.35	87.04
TraesCS1B01G227700.1	Wheat	cytosol	86.35	87.04
GSMUA_Achr2P18210_001	Banana	cytosol	83.97	86.58
GSMUA_Achr11P...	Banana	cytosol	84.13	86.32
VIT_15s0021g00480.t01	Wine grape	cytosol	82.86	84.33
PGSC0003DMT400004319	Potato	cytosol	80.48	82.57
Solyc01g088510.2.1	Tomato	nucleus	66.67	82.03
KRH46533	Soybean	cytosol, endoplasmic reticulum, nucleus	79.84	81.66
KRH48908	Soybean	cytosol, nucleus	79.37	80.91
KXG37727	Sorghum	cytosol, mitochondrion	78.1	80.39
KRH66384	Soybean	cytosol, endoplasmic reticulum	78.73	80.26
PGSC0003DMT400028286	Potato	cytosol	77.94	80.23
HORVU1Hr1G054560.1	Barley	mitochondrion	86.51	79.22
AT3G60190.1	Thale cress	cytosol	78.25	79.01
Solyc10g062160.1.1	Tomato	plastid	73.17	78.8
CDX71832	Canola	cytosol	78.1	78.72
CDY41188	Canola	cytosol	77.94	78.56
CDX89053	Canola	cytosol	77.78	78.27
Bra014507.1-P	Field mustard	cytosol	77.78	78.27
Bra007513.1-P	Field mustard	cytosol	77.62	78.24
CDY42672	Canola	cytosol	77.62	78.24
EER98546	Sorghum	cytosol	75.71	76.44
CDY23444	Canola	cytosol	73.81	75.24
CDY30477	Canola	cytosol	73.81	75.24
Bra037643.1-P	Field mustard	cytosol	73.49	74.92
AT2G44590.3	Thale cress	cytosol	72.7	74.84
PGSC0003DMT400004228	Potato	cytosol	33.49	74.56
EES19921	Sorghum	cytosol	66.67	68.97
EES01270	Sorghum	cytosol	65.56	67.82
OQU81360	Sorghum	cytosol	33.49	27.91
EES04116	Sorghum	cytosol	35.08	26.98
EER95148	Sorghum	cytosol	23.33	21.71
KXG39737	Sorghum	cytosol	22.54	21.71
KXG25176	Sorghum	cytosol	23.97	20.08
EES05560	Sorghum	nucleus	28.89	19.76
EER88160	Sorghum	cytosol, endoplasmic reticulum, nucleus	28.57	19.72
EES16755	Sorghum	cytosol	18.57	15.46
EES03602	Sorghum	plastid	19.37	14.79

Protein Annotations

Gene3D:1.20.120.1240	MapMan:22.1.7.1	Gene3D:3.40.50.300	UniProt:A0A1B6QLU6	InterPro:Dynamin_GTPase	InterPro:Dynamin_GTPase_CS
InterPro:Dynamin_SF	InterPro:Dynamin_central	InterPro:GED	InterPro:GED_dom	GO:GO:0000166	GO:GO:0003674
GO:GO:0003824	GO:GO:0003924	GO:GO:0005488	GO:GO:0005525	GO:GO:0016787	InterPro:G_DYNAMIN_dom
InterPro:IPR020850	InterPro:IPR030381	EnsemblPlants:KXG38886	ProteinID:KXG38886	ProteinID:KXG38886.1	ProteinID:OQU92117.1
InterPro:P-loop_NTPase	PFAM:PF00350	PFAM:PF01031	PFAM:PF02212	PRINTS:PR00195	ScanProsite:PS00410
PFscan:PS51388	PFscan:PS51718	PANTHER:PTHR11566	PANTHER:PTHR11566:SF73	SMART:SM00053	SMART:SM00302
EnsemblPlantsGene:SORBI_3001G292200	SUPFAM:SSF52540	UniParc:UPI00081AE560	SEG:seg	:	:

Description

hypothetical protein

Coordinates

chr1:+:56895709..56905451

Molecular Weight (calculated)

70387.3 Da

IEP (calculated)

7.235

GRAVY (calculated)

-0.353

Length

630 amino acids

Sequence
(BLAST)

001: MATMENVIEL VNRIQRACTV LGDHGGGDVA ALWEALPSVA VVGGQSSGKS SVLESIVGRD FLPRGSGIVT RRPLVLQLHK TEDGVQEYAE FLHMPKRRFT
101: DFALVRKEIQ DETDRLTGKT KQISPVPIHL SIYSPHVVNL TLIDLPGLTK VAVEGQPESI VQDIESMVRS YVDKPNCLIL AISPANQDIA TSDAIKLARD
201: VDPSGERTFG VLTKLDLMDK GTNALDVLEG RAYRLQHPWV GIVNRSQADI NKNVDMIIAR RKEQEFFDSS PEYSHLASRM GSEYLAKLLS QHLEAAIRSR
301: IPSITSLINK TIDELESEMD HLGRPIASDA GAQLYLILEL CRAFDKIFKE HLDGGRPGGD RIYGVFDNQL PSALRKLPFD RHLSVQNVKR VVSQADGYQP
401: HLIAPEQGYR RLIESSLNYF RGPAEASVDA VHSVLKELVR ISIGETQELK RFPSLQTELA AACYKALERF REDGRKTTLR LVDMESAYLT VEFFRKLPQE
501: VDKTGTANPR TANPPAPGNP RTANPPPPSD DRYTDAHFRR IASNVSSYIG MVSETLKNTI PKSVVHCQVR EAKRSLLNDF YTQVGGKDAK QLAVLLDEDP
601: ALMERRLQCF KRLELYKSAR DEIDSVSWTR

Best Arabidopsis Sequence Match ( AT3G60190.1 )
(BLAST)

001: MTTMESLIGL VNRIQRACTV LGDYGGGTGS NAFNSLWEAL PTVAVVGGQS SGKSSVLESI VGRDFLPRGS GIVTRRPLVL QLHKTDDGTE EYAEFLHLPK
101: KQFTDFALVR REIQDETDRI TGKNKQISPV PIHLSIYSPN VVNLTLIDLP GLTKVAVEGQ PETIAEDIES MVRTYVDKPN CIILAISPAN QDIATSDAIK
201: LAKDVDPTGE RTFGVLTKLD LMDKGTNALE VLEGRSYRLQ HPWVGIVNRS QADINKNVDM MLARRKEREY FDTSPDYGHL ASKMGSEYLA KLLSKHLESV
301: IRTRIPSILS LINKSIEELE RELDRMGRPV AVDAGAQLYT ILEMCRAFDK IFKEHLDGGR PGGDRIYGVF DNQLPAALKK LPFDRHLSLQ SVKKIVSEAD
401: GYQPHLIAPE QGYRRLIEGA LGYFRGPAEA SVDAVHYVLK ELVRKSISET EELKRFPSLQ VELAAAANSS LEKFREESKK SVIRLVDMES AYLTAEFFRK
501: LPQEIERPVT NSKNQTASPS SATLDQYGDG HFRRIASNVS AYVNMVSDTL RNTIPKACVY CQVRQAKLAL LNYFYSQISK REGKQLGQLL DEDPALMDRR
601: LECAKRLELY KKARDEIDAV AWVR

Arabidopsis Description

DRP1EDynamin-related protein 1E [Source:UniProtKB/Swiss-Prot;Acc:Q9FNX5]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.