CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: endoplasmic reticulum, nucleus, cytosol

Predictor Summary:

plastid 1
cytosol 4
mitochondrion 2

Predictors

GFP

MS/MS

Papers

nucleus: 21132161
endoplasmic reticulum: 27224218

msms PMID: 21132161 doi

B Cooper, KB Campbell, J Feng, WM Garrett, R Frederick

Soybean Genomics and Improvement Laboratory, USDA-ARS, Beltsville, MD 20705, USA. bret.cooper@ars.usda.gov

msms PMID: 27224218 doi

X Wang, S Komatsu

Graduate School of Life and Environmental Sciences, University of Tsukuba , Tsukuba 305-8572, Japan., National Institute of Crop Science, National Agriculture and Food Research Organization , Tsukuba 305-8518, Japan.

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
VIT_15s0021g00480.t01	Wine grape	cytosol	89.29	88.85
KRH48908	Soybean	cytosol, nucleus	87.66	87.38
GSMUA_Achr2P18210_001	Banana	cytosol	86.2	86.91
GSMUA_Achr11P...	Banana	cytosol	86.36	86.64
KRH66384	Soybean	cytosol, endoplasmic reticulum	86.69	86.41
PGSC0003DMT400004319	Potato	cytosol	85.06	85.34
Solyc01g088510.2.1	Tomato	nucleus	70.45	84.77
PGSC0003DMT400028286	Potato	cytosol	82.63	83.17
Os10t0567800-01	Rice	plasma membrane	83.28	83.01
GSMUA_AchrUn_...	Banana	cytosol	84.25	82.51
CDX71832	Canola	cytosol	83.44	82.24
AT3G60190.1	Thale cress	cytosol	83.28	82.21
Bra007513.1-P	Field mustard	cytosol	83.28	82.08
CDY41188	Canola	cytosol	83.28	82.08
CDY42672	Canola	cytosol	83.12	81.92
CDX89053	Canola	cytosol	83.12	81.79
Bra014507.1-P	Field mustard	cytosol	83.12	81.79
Solyc10g062160.1.1	Tomato	plastid	77.27	81.37
TraesCS1B01G227700.1	Wheat	cytosol	81.49	80.32
TraesCS1D01G216700.2	Wheat	cytosol	81.49	80.32
TraesCS1A01G213900.2	Wheat	cytosol	81.33	80.16
KXG38886	Sorghum	cytosol	81.66	79.84
KRH60421	Soybean	endoplasmic reticulum	79.06	78.93
Zm00001d030005_P002	Maize	cytosol, mitochondrion	51.3	78.61
KRH41722	Soybean	endoplasmic reticulum, nucleus	78.73	78.61
PGSC0003DMT400004228	Potato	cytosol	35.88	78.09
AT2G44590.3	Thale cress	cytosol	76.95	77.45
KRH04285	Soybean	cytosol	76.95	77.45
CDY30477	Canola	cytosol	77.6	77.35
CDY23444	Canola	cytosol	77.6	77.35
Bra037643.1-P	Field mustard	cytosol	77.27	77.02
EER98546	Sorghum	cytosol	76.95	75.96
KRH49665	Soybean	endoplasmic reticulum	75.81	75.57
Os09t0572900-01	Rice	cytosol, plasma membrane	76.79	75.56
KRH70357	Soybean	endoplasmic reticulum, nucleus	75.32	75.08
Zm00001d005306_P002	Maize	cytosol, extracellular, mitochondrion	76.46	75.0
HORVU1Hr1G054560.1	Barley	mitochondrion	80.68	72.24
KRH41321	Soybean	endoplasmic reticulum, nucleus	68.02	68.69
KRH60047	Soybean	endoplasmic reticulum	67.69	68.36
KRH27831	Soybean	cytosol, endoplasmic reticulum, nucleus	67.21	67.87
KRH47905	Soybean	cytosol, endoplasmic reticulum	66.88	67.65
KRH77654	Soybean	endoplasmic reticulum	66.72	67.38
KRH06461	Soybean	cytosol	52.44	62.24
KRH10618	Soybean	plastid	37.18	27.82
KRH21736	Soybean	nucleus	37.01	27.6
KRH49844	Soybean	plastid	36.2	27.46
KRH42074	Soybean	endoplasmic reticulum, nucleus	36.2	27.4
KRH62781	Soybean	nucleus	36.04	27.17
KRH21193	Soybean	cytosol	19.97	24.8
KRH11082	Soybean	cytosol	5.52	23.29
KRH42928	Soybean	cytosol	22.4	23.04
KRH59040	Soybean	cytosol	24.51	22.37
KRH21190	Soybean	cytosol	23.86	22.11
KRH36411	Soybean	endoplasmic reticulum, nucleus	30.84	20.61
KRH51295	Soybean	endoplasmic reticulum	30.52	20.57
KRH27552	Soybean	cytosol	30.36	20.28
KRH01870	Soybean	endoplasmic reticulum	30.03	20.24
KRH55251	Soybean	plastid	22.08	17.11
KRH26094	Soybean	plastid	21.43	16.42
KRH42202	Soybean	nucleus	19.64	16.11
KRH58326	Soybean	plasma membrane	8.77	10.82

Protein Annotations

Gene3D:1.20.120.1240	EntrezGene:100794878	MapMan:22.1.7.1	Gene3D:3.40.50.300	EMBL:ACUP02005348	InterPro:Dynamin_GTPase
InterPro:Dynamin_GTPase_CS	InterPro:Dynamin_SF	InterPro:Dynamin_central	InterPro:GED	InterPro:GED_dom	EnsemblPlantsGene:GLYMA_08G340200
GO:GO:0000166	GO:GO:0000266	GO:GO:0003674	GO:GO:0003824	GO:GO:0003924	GO:GO:0005488
GO:GO:0005515	GO:GO:0005525	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005737
GO:GO:0008017	GO:GO:0008150	GO:GO:0009987	GO:GO:0016043	GO:GO:0016787	InterPro:G_DYNAMIN_dom
UniProt:I1KYV5	InterPro:IPR020850	InterPro:IPR030381	EnsemblPlants:KRH46533	ProteinID:KRH46533	ProteinID:KRH46533.1
InterPro:P-loop_NTPase	PFAM:PF00350	PFAM:PF01031	PFAM:PF02212	PRINTS:PR00195	ScanProsite:PS00410
PFscan:PS51388	PFscan:PS51718	PANTHER:PTHR11566	PANTHER:PTHR11566:SF77	SMART:SM00053	SMART:SM00302
SUPFAM:SSF52540	UniParc:UPI00023CA36B	SEG:seg	:	:	:

Description

hypothetical protein

Coordinates

chr8:-:45634219..45643242

Molecular Weight (calculated)

69125.9 Da

IEP (calculated)

7.939

GRAVY (calculated)

-0.323

Length

616 amino acids

Sequence
(BLAST)

001: MTTTMESLIG LVNRIQRACT VLGDYGGADN NTFSSLWEAL PSVAVVGGQS SGKSSVLESI VGRDFLPRGS GIVTRRPLVL QLHKLESGSQ EYAEFLHLPR
101: RKFTDFALVR QEIQDETDRV TGKTKQISPI PIHLSIYSPN VVNLTLIDLP GLTKVAIEGQ PENIVQEIET MVRSYVEKPN CIILAISPAN QDIATSDAIK
201: LAKEVDPTGE RTFGVLTKLD LMDKGTNALD VLEGRSYRLQ HPWVGIVNRS QADINRNVDM IVARRKEREY FATSSDYGHL ANKMGSEYLA KLLSQHLESV
301: IRARIPSITS LINKSIEELE SEMDHLGRPI ALDAGAQLYT ILELCRAFER IFKEHLDGGR PGGDRIYNVF DNQLPAALRK LPLDRHLSLQ NVRKVVSEAD
401: GYQPHLIAPE QGYRRLIEGA LGYFRGPAEA SVDAVNFVLK ELVRKSIAET KELKRFPTFQ AELAAAANEA LERFREESKK TTVRLVDMES SYLTVDFFRR
501: LPQEVEKSGT PAATNIDRYA EGHFRRIASN VSSYIGLVAD TLRNTIPKAV VYCQVRQAKQ SLLNHFYTQI GKKEGKQLSQ MLDEDPALME RRQQCAKRLE
601: LYKAARDEID SVSWVR

Best Arabidopsis Sequence Match ( AT3G60190.1 )
(BLAST)

001: MTTMESLIGL VNRIQRACTV LGDYGGGTGS NAFNSLWEAL PTVAVVGGQS SGKSSVLESI VGRDFLPRGS GIVTRRPLVL QLHKTDDGTE EYAEFLHLPK
101: KQFTDFALVR REIQDETDRI TGKNKQISPV PIHLSIYSPN VVNLTLIDLP GLTKVAVEGQ PETIAEDIES MVRTYVDKPN CIILAISPAN QDIATSDAIK
201: LAKDVDPTGE RTFGVLTKLD LMDKGTNALE VLEGRSYRLQ HPWVGIVNRS QADINKNVDM MLARRKEREY FDTSPDYGHL ASKMGSEYLA KLLSKHLESV
301: IRTRIPSILS LINKSIEELE RELDRMGRPV AVDAGAQLYT ILEMCRAFDK IFKEHLDGGR PGGDRIYGVF DNQLPAALKK LPFDRHLSLQ SVKKIVSEAD
401: GYQPHLIAPE QGYRRLIEGA LGYFRGPAEA SVDAVHYVLK ELVRKSISET EELKRFPSLQ VELAAAANSS LEKFREESKK SVIRLVDMES AYLTAEFFRK
501: LPQEIERPVT NSKNQTASPS SATLDQYGDG HFRRIASNVS AYVNMVSDTL RNTIPKACVY CQVRQAKLAL LNYFYSQISK REGKQLGQLL DEDPALMDRR
601: LECAKRLELY KKARDEIDAV AWVR

Arabidopsis Description

DRP1EDynamin-related protein 1E [Source:UniProtKB/Swiss-Prot;Acc:Q9FNX5]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.