CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 2
cytosol 3
plastid 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	cytosol, mitochondrion, nucleus, plastid
BaCelLo:	nucleus
MultiLoc:	cytosol
Plant-mPloc:	cytosol, plastid
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	cytosol

nucleus: 21132161

msms PMID: 21132161 doi

B Cooper, KB Campbell, J Feng, WM Garrett, R Frederick

Soybean Genomics and Improvement Laboratory, USDA-ARS, Beltsville, MD 20705, USA. bret.cooper@ars.usda.gov

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
VIT_12s0055g00490.t01	Wine grape	cytosol	83.49	81.11
KRH58326	Soybean	plasma membrane	53.4	80.36
Solyc10g047050.1.1	Tomato	nucleus	82.42	80.29
PGSC0003DMT400014025	Potato	cytosol	82.42	80.29
AT3G19720.1	Thale cress	cytosol	79.23	76.58
CDY33414	Canola	cytosol	79.23	76.58
GSMUA_Achr10P...	Banana	cytosol	68.71	75.99
Bra038229.1-P	Field mustard	cytosol	79.09	75.57
CDY42203	Canola	cytosol	79.09	75.57
KRH04285	Soybean	cytosol	16.51	20.26
KRH60421	Soybean	endoplasmic reticulum	16.51	20.1
KRH41722	Soybean	endoplasmic reticulum, nucleus	16.51	20.1
KRH70357	Soybean	endoplasmic reticulum, nucleus	16.51	20.06
KRH49665	Soybean	endoplasmic reticulum	16.51	20.06
KRH46533	Soybean	cytosol, endoplasmic reticulum, nucleus	16.11	19.64
KRH77654	Soybean	endoplasmic reticulum	15.85	19.51
KRH27831	Soybean	cytosol, endoplasmic reticulum, nucleus	15.85	19.51
KRH60047	Soybean	endoplasmic reticulum	15.85	19.51
KRH48908	Soybean	cytosol, nucleus	15.98	19.42
KRH66384	Soybean	cytosol, endoplasmic reticulum	15.98	19.42
KRH41321	Soybean	endoplasmic reticulum, nucleus	15.58	19.18
KRH11082	Soybean	cytosol	3.73	19.18
KRH47905	Soybean	cytosol, endoplasmic reticulum	15.18	18.72
KRH42928	Soybean	cytosol	14.11	17.7
KRH59040	Soybean	cytosol	15.71	17.48
KRH21190	Soybean	cytosol	15.31	17.29
KRH06461	Soybean	cytosol	11.58	16.76
KRH21193	Soybean	cytosol	10.92	16.53
KRH49844	Soybean	plastid	17.71	16.38
KRH42074	Soybean	endoplasmic reticulum, nucleus	17.58	16.22
KRH10618	Soybean	plastid	17.58	16.04
KRH21736	Soybean	nucleus	17.44	15.86
KRH26094	Soybean	plastid	16.38	15.3
KRH55251	Soybean	plastid	16.11	15.22
KRH62781	Soybean	nucleus	16.38	15.06
KRH51295	Soybean	endoplasmic reticulum	15.18	12.47
KRH01870	Soybean	endoplasmic reticulum	14.91	12.25
KRH27552	Soybean	cytosol	14.78	12.04
KRH36411	Soybean	endoplasmic reticulum, nucleus	14.65	11.93

Protein Annotations

EntrezGene:100788365	MapMan:13.6.1.3	Gene3D:3.40.50.300	EMBL:ACUP02004791	ncoils:Coil	InterPro:Dynamin_GTPase
InterPro:Dynamin_SF	EnsemblPlantsGene:GLYMA_08G075100	GO:GO:0000166	GO:GO:0003674	GO:GO:0003824	GO:GO:0003924
GO:GO:0005488	GO:GO:0005515	GO:GO:0005525	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623
GO:GO:0005737	GO:GO:0005777	GO:GO:0008017	GO:GO:0008150	GO:GO:0009507	GO:GO:0009536
GO:GO:0009987	GO:GO:0010020	GO:GO:0016043	GO:GO:0016559	GO:GO:0016787	InterPro:G_DYNAMIN_dom
UniProt:I1KR58	InterPro:IPR030381	EnsemblPlants:KRH42202	ProteinID:KRH42202	ProteinID:KRH42202.1	InterPro:P-loop_NTPase
PFAM:PF00350	PRINTS:PR00195	PFscan:PS51718	PANTHER:PTHR11566	PANTHER:PTHR11566:SF78	SMART:SM00053
SUPFAM:SSF52540	UniParc:UPI00023386C4	SEG:seg	:	:	:

Description

hypothetical protein

Coordinates

chr8:+:5737683..5745039

Molecular Weight (calculated)

84809.4 Da

IEP (calculated)

6.690

GRAVY (calculated)

-0.363

Length

751 amino acids

Sequence
(BLAST)

001: MEKEEEEQRE WRLYEGYNEL HALAQDLHTP FDAPAVLVVG HQTDGKSALV EALMGFQFNH VGGGTKTRRP ITLHMKYDPQ CESPSCHLVS DSDPSLSHHK
101: SLPQIQAYIE AENARLEQDT SQFSAKEIII KVEYKYCPNL TIIDTPGLIA PAPGRKNRAL QAQARAVESL VREKMQHKEF IILCLEDCSD WSNATTRRVV
201: MQVDPELART VIVSTKLDTR IPQFARPSDV EVFLSPPPST LDGCILGDSP FFTSVPSGRV GCGSGYLHSS NDEFKQAVCF REIEDVASLE EKLGRALSKQ
301: ERSRIGVSKL RLFLEELLQK RYINNVPLII PLLEKEYRSV TRKLSDINQE LSTLDEAKLK EKGRAFHDMF LTKLSLLLKG TVVAPPDKFG ETLQDERING
401: GAFIGADGVQ FPHKLIPNAG MRLYGGAQYH RAMAEFRFLV GGIKCPPITR EEIVNACGVE DIHDGTNYSR TACVIAVAKA RDTFEPFLHQ LGSRLLYILK
501: RLLPISVFLL QKDSEYLSGH EVFLRRVASA FNNFAESTEK SCREKCMEDL VSTTRYVSWS LHNKSRAGLR QFLDSFGGTE HSNACNNPTA TVLSQTSAHE
601: KEDTKSQPDV KLSHVASGTD SSSSIQTTET KLADLLDSTL WNRRLAPSSE RIVYGLVQQI FHGIREYFLV STELKFNCFL LMPIVDKLPA LLREDLESAF
701: QDDLDNVFDI TNLQHSFGQQ KRETEIELKR IKRLKEKFRM IHEQLIQNQT M

Best Arabidopsis Sequence Match ( AT3G19720.1 )
(BLAST)

001: MAEVSAKSVT VEEMAEEDDA AIEERWSLYE AYNELHALAQ ELETPFEAPA VLVVGQQTDG KSALVEALMG FQFNHVGGGT KTRRPITLHM KYDPQCQFPL
101: CHLGSDDDPS VSLPKSLSQI QAYIEAENMR LEQEPCSPFS AKEIIVKVQY KYCPNLTIID TPGLIAPAPG LKNRALQVQA RAVEALVRAK MQHKEFIILC
201: LEDSSDWSIA TTRRIVMQVD PELSRTIVVS TKLDTKIPQF SCSSDVEVFL SPPASALDSS LLGDSPFFTS VPSGRVGYGQ DSVYKSNDEF KQAVSLREME
301: DIASLEKKLG RLLTKQEKSR IGISKLRLFL EELLWKRYKE SVPLIIPLLG KEYRSTVRKL DTVSKELSSL DEAKLKERGR TFHDLFLTKL SLLLKGTVVA
401: PPDKFGETLQ DERTQGGAFV GTDGLQFSHK LIPNAGMRLY GGAQYHRAMA EFRFLVGAIK CPPITREEIV NACGVEDIHD GTNYSRTACV IAVAKARETF
501: EPFLHQLGAR LLHILKRLLP ISVYLLQKEG EYLSGHEVFL KRVASAFNSF VESTEKSCRD KCMEDLASTT RYVTWSLHNK NRAGLRQFLD SFGGTEHNTT
601: SGNAIGFSLP QDALGGTTDT KSRSDVKLSH LASNIDSGSS IQTTEMRLAD LLDSTLWNRK LAPSSERIVY ALVQQIFQGI REYFLASAEL KFNCFLLMPI
701: VDKLPALLRE ELENAFEDDL DSIFDITNLR QSLDQKKRST EIELRRIKRI KEKFRVMNEK LNSHEFAQNL KAPSVQH

Arabidopsis Description

ARC5Dynamin-like protein ARC5 [Source:UniProtKB/Swiss-Prot;Acc:Q84N64]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.