Factsheet for PGSC0003DMT400014025

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 2
cytosol 3
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, mitochondrion, nucleus
BaCelLo:	nucleus
MultiLoc:	cytosol
Plant-mPloc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Solyc10g047050.1.1	Tomato	nucleus	98.96	98.96
VIT_12s0055g00490.t01	Wine grape	cytosol	84.82	84.61
KRH42202	Soybean	nucleus	80.29	82.42
GSMUA_Achr10P...	Banana	cytosol	67.57	76.73
CDY33414	Canola	cytosol	77.17	76.58
AT3G19720.1	Thale cress	cytosol	77.04	76.45
Bra038229.1-P	Field mustard	cytosol	77.17	75.7
CDY42203	Canola	cytosol	77.17	75.7
KRH58326	Soybean	plasma membrane	44.36	68.54
PGSC0003DMT400028286	Potato	cytosol	16.21	20.42
PGSC0003DMT400004319	Potato	cytosol	16.21	20.36
PGSC0003DMT400051417	Potato	cytosol	14.4	20.07
PGSC0003DMT400000646	Potato	cytosol	15.69	19.84
PGSC0003DMT400004655	Potato	cytosol	15.69	19.84
PGSC0003DMT400095128	Potato	cytosol	9.6	16.86
PGSC0003DMT400004228	Potato	cytosol	5.84	15.9
PGSC0003DMT400064542	Potato	cytosol	13.75	15.7
PGSC0003DMT400072601	Potato	cytosol	12.32	15.35
PGSC0003DMT400065607	Potato	cytosol	4.02	15.12
PGSC0003DMT400050652	Potato	cytosol	11.93	14.96
PGSC0003DMT400064541	Potato	cytosol	11.8	14.87
PGSC0003DMT400032399	Potato	plastid	15.82	14.79
PGSC0003DMT400064491	Potato	cytosol	7.39	14.39
PGSC0003DMT400088564	Potato	cytosol	2.2	13.82
PGSC0003DMT400094747	Potato	cytosol	6.36	11.86

Protein Annotations

EntrezGene:102592403	MapMan:13.6.1.3	Gene3D:3.40.50.300	ncoils:Coil	InterPro:Dynamin_GTPase	InterPro:Dynamin_SF
GO:GO:0000166	GO:GO:0003674	GO:GO:0003824	GO:GO:0003924	GO:GO:0005488	GO:GO:0005515
GO:GO:0005525	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005737	GO:GO:0005777
GO:GO:0007623	GO:GO:0008150	GO:GO:0009507	GO:GO:0009536	GO:GO:0009707	GO:GO:0009987
GO:GO:0010020	GO:GO:0016020	GO:GO:0016043	GO:GO:0016559	GO:GO:0016787	GO:GO:0042802
InterPro:G_DYNAMIN_dom	InterPro:IPR030381	UniProt:M1A3N1	InterPro:P-loop_NTPase	PFAM:PF00350	EnsemblPlantsGene:PGSC0003DMG400005500
PGSC:PGSC0003DMG400005500	EnsemblPlants:PGSC0003DMT400014025	PRINTS:PR00195	PFscan:PS51718	PANTHER:PTHR11566	PANTHER:PTHR11566:SF78
SMART:SM00053	SUPFAM:SSF52540	UniParc:UPI0002950C91	RefSeq:XP_006341828.1	RefSeq:XP_006341829.1	RefSeq:XP_015161802.1
SEG:seg	:	:	:	:	:

Description

GTP binding protein [Source:PGSC_GENE;Acc:PGSC0003DMG400005500]

Coordinates

chr10:+:27681376..27699088

Molecular Weight (calculated)

86674.4 Da

IEP (calculated)

6.310

GRAVY (calculated)

-0.353

Length

771 amino acids

Sequence
(BLAST)

001: MAGEESSPDS ATKNIDELEG QWRLYEAYNE LHGLAQEFDT PFDAPAVLVV GHQTDGKSAL VEALMGFQFN HVGGGTKTRR PITLHMKYNP ECDTPLCHLL
101: SDSDPSVSHE KSLQDIQAYI EAENMRLEKE TCQFSAKEII IRIEYKYCPN LTIIDTPGLV APAPSRKNRA LQAQARAVES LVRAKMQHRE LIILCLEDCN
201: DWSNATTRRV VMQIDPELSR TVVVATKLDT KIPQFARASD VEVFLSPPAS TLDGFMLGDS PFFTSVPSGR VGFGPESVFR SNDEFKQAIS SREVEDLVAL
301: EEKLGRALSK QERSRIGVNS LRLFLEELLL KRYMDSVPSI IPLLEKEYRS STRKLSELDQ QLSSLNEAKL KEKGRTFHDL FLTKLSLLLK GTVIAPPDKF
401: GETLQDERVN GGAFIGSDGL QFPHKLIPNA GMRLYGGAQY HRAMAEFRFV VGGIKCPPIT REEIVNACGV EDIHDGTNYS RTACVIAVAK ARDTFEPFLH
501: QLGCRLSHIL KRLLPIAVYL LQKEGEYLSG HDVFLRRVAD AFNNFAESTE KSCREKCMED LVSTTRYVTW SLHNKNRAGL RQFLDSFGGS EQSAIIGNST
601: STGLSQDLST ASVASDNKQD VKPRTDVKLS HLASGNDSNM STQTTETRLA DLLDSTLWNR RLAPSSERIV YALVQQIFHG IREYFLASTE LKFNCFLLMP
701: VVDKLPAMLR EDLESAFEDN LDNVFDITNL RHSVAQDKRQ TEIELKRVQK LKEKFRYIHE QLNSQQAMFG Q

Best Arabidopsis Sequence Match ( AT3G19720.1 )
(BLAST)

001: MAEVSAKSVT VEEMAEEDDA AIEERWSLYE AYNELHALAQ ELETPFEAPA VLVVGQQTDG KSALVEALMG FQFNHVGGGT KTRRPITLHM KYDPQCQFPL
101: CHLGSDDDPS VSLPKSLSQI QAYIEAENMR LEQEPCSPFS AKEIIVKVQY KYCPNLTIID TPGLIAPAPG LKNRALQVQA RAVEALVRAK MQHKEFIILC
201: LEDSSDWSIA TTRRIVMQVD PELSRTIVVS TKLDTKIPQF SCSSDVEVFL SPPASALDSS LLGDSPFFTS VPSGRVGYGQ DSVYKSNDEF KQAVSLREME
301: DIASLEKKLG RLLTKQEKSR IGISKLRLFL EELLWKRYKE SVPLIIPLLG KEYRSTVRKL DTVSKELSSL DEAKLKERGR TFHDLFLTKL SLLLKGTVVA
401: PPDKFGETLQ DERTQGGAFV GTDGLQFSHK LIPNAGMRLY GGAQYHRAMA EFRFLVGAIK CPPITREEIV NACGVEDIHD GTNYSRTACV IAVAKARETF
501: EPFLHQLGAR LLHILKRLLP ISVYLLQKEG EYLSGHEVFL KRVASAFNSF VESTEKSCRD KCMEDLASTT RYVTWSLHNK NRAGLRQFLD SFGGTEHNTT
601: SGNAIGFSLP QDALGGTTDT KSRSDVKLSH LASNIDSGSS IQTTEMRLAD LLDSTLWNRK LAPSSERIVY ALVQQIFQGI REYFLASAEL KFNCFLLMPI
701: VDKLPALLRE ELENAFEDDL DSIFDITNLR QSLDQKKRST EIELRRIKRI KEKFRVMNEK LNSHEFAQNL KAPSVQH

Arabidopsis Description

ARC5Dynamin-like protein ARC5 [Source:UniProtKB/Swiss-Prot;Acc:Q84N64]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.