Factsheet for PGSC0003DMT400064542

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 1
cytosol 4
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, mitochondrion, nucleus
BaCelLo:	nucleus
MultiLoc:	cytosol
Plant-mPloc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
PGSC0003DMT400064541	Potato	cytosol	88.44	97.55
Solyc04g072030.1.1	Tomato	cytosol	96.74	96.74
PGSC0003DMT400064491	Potato	cytosol	55.85	95.2
PGSC0003DMT400072601	Potato	cytosol	72.15	78.68
PGSC0003DMT400095128	Potato	cytosol	49.48	76.08
PGSC0003DMT400050652	Potato	cytosol	66.67	73.17
PGSC0003DMT400088564	Potato	cytosol	12.44	68.29
AT1G60530.1	Thale cress	cytosol	30.37	68.11
KRH21193	Soybean	cytosol	47.11	64.11
KRH42928	Soybean	cytosol	56.89	64.11
KRH21190	Soybean	cytosol	61.93	62.86
CDY47217	Canola	cytosol	47.11	61.87
KRH59040	Soybean	cytosol	61.63	61.63
CDY47216	Canola	cytosol	48.59	60.97
PGSC0003DMT400065607	Potato	cytosol	18.37	60.49
CDY53048	Canola	cytosol	44.74	60.4
CDY36456	Canola	cytosol	16.44	59.68
Bra027151.1-P	Field mustard	cytosol	58.52	58.52
TraesCS4D01G217900.1	Wheat	cytosol	57.19	58.22
KRH11082	Soybean	cytosol	12.59	58.22
TraesCS4B01G217700.1	Wheat	cytosol	54.52	57.68
Os03t0260000-01	Rice	cytosol	57.63	57.37
CDY53046	Canola	cytosol	57.04	57.12
GSMUA_Achr8P19650_001	Banana	cytosol, mitochondrion	47.11	57.09
EER95148	Sorghum	cytosol	57.04	56.87
Zm00001d028495_P001	Maize	cytosol	56.59	56.68
CDY34120	Canola	cytosol	54.67	56.42
KXG39737	Sorghum	cytosol	54.67	56.42
AT1G60500.1	Thale cress	mitochondrion	55.85	56.35
HORVU4Hr1G061820.3	Barley	plastid	56.74	56.32
Bra031505.1-P	Field mustard	cytosol	47.56	56.12
Bra031502.1-P	Field mustard	cytosol	54.37	56.12
CDY24536	Canola	cytosol	54.37	56.12
TraesCS4A01G086700.1	Wheat	cytosol	54.96	55.87
CDY02039	Canola	cytosol, plastid	45.93	55.46
CDY34117	Canola	cytosol	42.07	53.79
CDY03289	Canola	cytosol	42.07	53.79
CDY53047	Canola	cytosol	7.7	53.61
Bra010250.1-P	Field mustard	cytosol	31.26	53.42
Os04t0129900-01	Rice	cytosol	54.07	53.36
TraesCS4A01G213700.1	Wheat	cytosol	46.67	53.21
TraesCS4D01G098800.1	Wheat	cytosol	53.48	52.78
Zm00001d028497_P001	Maize	cytosol	48.59	52.56
CDY23281	Canola	cytosol	30.67	52.27
PGSC0003DMT400094747	Potato	cytosol	30.81	50.36
Bra031511.1-P	Field mustard	cytosol	24.59	26.86
CDY24530	Canola	cytosol, nucleus, plasma membrane	25.19	26.81
PGSC0003DMT400028286	Potato	cytosol	23.7	26.14
PGSC0003DMT400004655	Potato	cytosol	23.56	26.07
PGSC0003DMT400004319	Potato	cytosol	23.7	26.06
PGSC0003DMT400051417	Potato	cytosol	20.89	25.5
PGSC0003DMT400000646	Potato	cytosol	22.81	25.25
PGSC0003DMT400004228	Potato	cytosol	7.11	16.96
PGSC0003DMT400014025	Potato	cytosol	15.7	13.75
PGSC0003DMT400032399	Potato	plastid	16.59	13.58

Protein Annotations

EntrezGene:102581679	Gene3D:3.40.50.300	MapMan:35.1	InterPro:Dynamin_GTPase	InterPro:Dynamin_SF	InterPro:Dynamin_central
InterPro:GED	InterPro:GED_dom	GO:GO:0000166	GO:GO:0003674	GO:GO:0003824	GO:GO:0003924
GO:GO:0005488	GO:GO:0005525	GO:GO:0016787	InterPro:G_DYNAMIN_dom	InterPro:IPR020850	InterPro:IPR030381
UniProt:M1CCJ5	InterPro:P-loop_NTPase	PFAM:PF00350	PFAM:PF01031	PFAM:PF02212	EnsemblPlantsGene:PGSC0003DMG400025080
PGSC:PGSC0003DMG400025080	EnsemblPlants:PGSC0003DMT400064542	PRINTS:PR00195	PFscan:PS51388	PFscan:PS51718	PANTHER:PTHR11566
PANTHER:PTHR11566:SF135	SMART:SM00053	SMART:SM00302	SUPFAM:SSF52540	UniParc:UPI00029526F2	RefSeq:XP_006359033.1
SEG:seg	:	:	:	:	:

Description

Interferon-induced GTP-binding protein mx [Source:PGSC_GENE;Acc:PGSC0003DMG400025080]

Coordinates

chr4:+:61292497..61294861

Molecular Weight (calculated)

75958.6 Da

IEP (calculated)

5.680

GRAVY (calculated)

-0.131

Length

675 amino acids

Sequence
(BLAST)

001: MAYQNTNGCI SDSIEILDPK PLAVVASGVV HPPIVASFND RIRPLLDCID KLRHLNIMQE GIQLPTIVVV GDQSSGKSSV LESLAGISLP RGQGICTRVP
101: LVMRLQNDPN ITAPNLQLEY NNKSLPVDEI GIADAIILAT DEIAGHGKGI SNYPLTLVVK KNGVPDLTMV DLPGITRVAV QGQPEDIYEQ VYDIIMKYIV
201: PEESIILNVL SATVDFPTCE SIRMSQKVDK TGERTLAVVT KADKTTEGLL EKVTADEVNI GLGYVCVRNR IGNESYEEAR SDEQRLFSTH PLLSKIDKSM
301: VSVPILAQKL VRIQASIISK CLPEIVRKIN DRLAANLAEL NRLPQHLTSV AEALTAFMRI LSSSKDSLKK ILLSGEFDEY PDDKEMHSAA RIVEMLNQYS
401: NELHSKNFEK ADEFLMEEIM VLQETKGIGL PNFLPRAVFL NVLQRKVKEI AASPEDFVGK LWNYLERVVI IVLMYHCENY PQLQSSTRRA AQNLIAKKKN
501: ESVDWVREII GMEKLTDYTC NPDYLTTYSK FMAQQHMFME IMNDHGKCSV INLEGVGEID VGHLRKHLDV VQQAFDLKMR MMAYWKIVLM RLVDSMALHI
601: MFSIRNMINK EMENEIIQDL MAPHGGGIER MLDESPLVAE KRNRLKKSVK LLKESKEVVA NIMDRISLYD DHESD

Best Arabidopsis Sequence Match ( AT1G60500.1 )
(BLAST)

001: MVKKKVATKK NSPSLAIAKK KSRSNKDVVS VEAPIISSYN DRIRPLLDTV DRLRNLNVMR EGIHLPTIVV VGDQSSGKSS VLESLAGISL PRGQGICTRV
101: PLVMRLQRSS SPEPEIWLEY NDKVVPTDEE HIAEAIRAAT DVIAGSGKGV SDAPLTLHVK KAGVPDLTMV DLPGITRVPV NGQPENIYEQ ISGMIMEYIE
201: PQESIILNVL SATVDFTTCE SIRMSRKVDK TGQRTLAVVT KADMAPEGLL QKVTADDVSI VLGYVCVRNR IGEETYEEAR MQEELLFRTH PVLSLIDEDI
301: VGIPVLAQKL MLIQSSMIAR CLPKIVSKIN QKLDTAVLEL NKLPMVMAST GEALMALMDI IGSAKESLLR ILVQGDFSEY PDDQNMHCTA RLADMLSQFS
401: DSLQAKPKEV AEFLMDEIKI LDECKCVGLP NFIPRSAFLA ILSQHVDGIQ DKPVEFINKI WDYIEDVLSS VTAKRSDNFP QIQSSIKRAG RNLISKIKEQ
501: SVNRVMEIVE MEKLTDYTCN PEYMTSWTQK TSAQESFIDA VVKNENIPDY FSVTGFGNVK ISHLRKYHAH LLIPAFDMKM RITSYWKIVL RRIVDNLALY
601: LQLSVKSLVN TRFQKEIVAE MVDPRDGGGV EKMLEESPLV ASKREKLQNS IKLLKESKDA VAAIVDQNC

Arabidopsis Description

DRP4CDynamin-related protein 4C [Source:UniProtKB/Swiss-Prot;Acc:Q9ZP55]
SUBAcon: [mitochondrion]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.