Factsheet for Solyc04g072030.1.1

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 1
cytosol 4
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, mitochondrion, nucleus
BaCelLo:	nucleus
MultiLoc:	cytosol
Plant-mPloc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
PGSC0003DMT400064542	Potato	cytosol	96.74	96.74
PGSC0003DMT400064541	Potato	cytosol	85.78	94.61
PGSC0003DMT400064491	Potato	cytosol	54.52	92.93
AT1G60530.1	Thale cress	cytosol	30.81	69.1
KRH21193	Soybean	cytosol	47.26	64.31
KRH42928	Soybean	cytosol	56.89	64.11
KRH21190	Soybean	cytosol	62.22	63.16
CDY47217	Canola	cytosol	47.56	62.45
KRH59040	Soybean	cytosol	62.07	62.07
CDY47216	Canola	cytosol	49.33	61.9
Solyc11g069980.1.1	Tomato	cytosol	72.44	61.2
CDY53048	Canola	cytosol	45.33	61.2
KRH11082	Soybean	cytosol	13.04	60.27
CDY36456	Canola	cytosol	16.59	60.22
Bra027151.1-P	Field mustard	cytosol	58.67	58.67
TraesCS4D01G217900.1	Wheat	cytosol	57.33	58.37
CDY53046	Canola	cytosol	58.07	58.16
TraesCS4B01G217700.1	Wheat	cytosol	54.52	57.68
Os03t0260000-01	Rice	cytosol	57.78	57.52
Bra031505.1-P	Field mustard	cytosol	48.3	56.99
AT1G60500.1	Thale cress	mitochondrion	56.44	56.95
GSMUA_Achr8P19650_001	Banana	cytosol, mitochondrion	46.96	56.91
CDY34120	Canola	cytosol	54.96	56.73
EER95148	Sorghum	cytosol	56.89	56.72
KXG39737	Sorghum	cytosol	54.81	56.57
HORVU4Hr1G061820.3	Barley	plastid	56.89	56.47
CDY24536	Canola	cytosol	54.67	56.42
Bra031502.1-P	Field mustard	cytosol	54.67	56.42
Zm00001d028495_P001	Maize	cytosol	56.3	56.38
TraesCS4A01G086700.1	Wheat	cytosol	54.96	55.87
CDY02039	Canola	cytosol, plastid	46.07	55.64
CDY34117	Canola	cytosol	42.81	54.73
CDY03289	Canola	cytosol	42.81	54.73
Os04t0129900-01	Rice	cytosol	54.22	53.51
TraesCS4A01G213700.1	Wheat	cytosol	46.52	53.04
Bra010250.1-P	Field mustard	cytosol	30.96	52.91
Zm00001d028497_P001	Maize	cytosol	48.89	52.88
TraesCS4D01G098800.1	Wheat	cytosol	53.48	52.78
CDY53047	Canola	cytosol	7.56	52.58
CDY23281	Canola	cytosol	30.37	51.77
Solyc11g070010.1.1	Tomato	cytosol	24.3	41.73
Solyc11g043170.1.1	Tomato	cytosol	7.56	31.29
Solyc11g043200.1.1	Tomato	cytosol, nucleus	10.22	30.13
Bra031511.1-P	Field mustard	cytosol	24.44	26.7
CDY24530	Canola	cytosol, nucleus, plasma membrane	25.04	26.66
Solyc05g050600.2.1	Tomato	nucleus, plastid	23.85	26.44
Solyc08g077360.2.1	Tomato	plastid	23.7	26.23
Solyc01g005310.2.1	Tomato	plastid	24.15	26.21
Solyc01g095970.2.1	Tomato	plastid	22.96	25.41
Solyc10g062160.1.1	Tomato	plastid	21.78	25.13
Solyc01g088510.2.1	Tomato	nucleus	18.22	24.02
Solyc08g006600.2.1	Tomato	plastid	23.7	21.19
Solyc01g106050.2.1	Tomato	plastid	25.63	21.05
Solyc01g103130.1.1	Tomato	nucleus, unclear	13.48	14.99
Solyc10g047050.1.1	Tomato	nucleus	15.85	13.88
Solyc07g063080.2.1	Tomato	plastid	16.89	13.75
Solyc11g043210.1.1	Tomato	nucleus	10.37	12.7
Solyc11g039650.1.1	Tomato	cytosol, nucleus, plastid	16.89	12.4
Solyc01g103120.2.1	Tomato	cytosol	2.37	5.42

Protein Annotations

Gene3D:1.20.120.1240	Gene3D:3.40.50.300	MapMan:35.1	InterPro:Dynamin_GTPase	InterPro:Dynamin_SF	InterPro:Dynamin_central
InterPro:GED	InterPro:GED_dom	GO:GO:0000166	GO:GO:0000266	GO:GO:0003674	GO:GO:0003824
GO:GO:0003924	GO:GO:0005488	GO:GO:0005515	GO:GO:0005525	GO:GO:0005575	GO:GO:0005622
GO:GO:0005623	GO:GO:0005737	GO:GO:0008017	GO:GO:0008150	GO:GO:0009987	GO:GO:0016043
GO:GO:0016787	InterPro:G_DYNAMIN_dom	InterPro:IPR020850	InterPro:IPR030381	UniProt:K4BTJ0	InterPro:P-loop_NTPase
PFAM:PF00350	PFAM:PF01031	PFAM:PF02212	PRINTS:PR00195	PFscan:PS51388	PFscan:PS51718
PANTHER:PTHR11566	PANTHER:PTHR11566:SF135	SMART:SM00053	SMART:SM00302	SUPFAM:SSF52540	EnsemblPlantsGene:Solyc04g072030.1
EnsemblPlants:Solyc04g072030.1.1	UniParc:UPI0002766C0E	SEG:seg	:	:	:

Description

No Description!

Coordinates

chr4:+:59102655..59104682

Molecular Weight (calculated)

75940.7 Da

IEP (calculated)

5.920

GRAVY (calculated)

-0.130

Length

675 amino acids

Sequence
(BLAST)

001: MAYQNINGCI SDSIEILDPK PLAVVASGVV HPPIVASFND RIRPLLDCID KLRHLNIMQE GIQLPTIVVV GDQSSGKSSV LESLAGISLP RGQGICTRVP
101: LVMRLQNDPN ITAPSLQLEY NNKSLPVDEI GIADAIILAT DEIAGHGKGI SNYPLTLVVK KNGVPDLTMV DLPGITRVAV QGQPEDIYEQ IYDIIMKYIV
201: PEESIILNVL SATVDFPTCE SIRMSQKVDK TGERTLAVVT KADKAPEGLL EKVTADEVNI GLGYVCVRNR IGNESYEEAR SDEERLFSTH PLLSKIDKSM
301: VSVPVLAQKL VRIQASIISK CLPEIVRKIN DRLAANLAEL NRLPQHLTSV AEALTAFMRI LSSSKDSLKK ILLSGEFDEY PNEKEMHSAA RIVEMLNQYS
401: NELHTKNFEK VDEFLMEEIM VLQESKGIGL PNFLPRGVFL NVLQRKVKEI AASPEDFVGK LWNYLERVVI IVLMHHCENY PQLQSSTRRA AQNLIAKKKN
501: ESVDWVREII GMEKLTDYTC NPDYLTTYSK FMAQQNTFME IMNDHGKYSM INLEGVGVID VGHLRKHLDV VQQAFDLKMR MMAYWKIVLM RLVDSMALHI
601: MFSIRNMINK EMENEIIQDL MAPHGGGIER MLDESPLVAE KRNRLKKSVK LLKESKEVVA NIMDRISLHD DNERD

Best Arabidopsis Sequence Match ( AT1G60500.1 )
(BLAST)

001: MVKKKVATKK NSPSLAIAKK KSRSNKDVVS VEAPIISSYN DRIRPLLDTV DRLRNLNVMR EGIHLPTIVV VGDQSSGKSS VLESLAGISL PRGQGICTRV
101: PLVMRLQRSS SPEPEIWLEY NDKVVPTDEE HIAEAIRAAT DVIAGSGKGV SDAPLTLHVK KAGVPDLTMV DLPGITRVPV NGQPENIYEQ ISGMIMEYIE
201: PQESIILNVL SATVDFTTCE SIRMSRKVDK TGQRTLAVVT KADMAPEGLL QKVTADDVSI VLGYVCVRNR IGEETYEEAR MQEELLFRTH PVLSLIDEDI
301: VGIPVLAQKL MLIQSSMIAR CLPKIVSKIN QKLDTAVLEL NKLPMVMAST GEALMALMDI IGSAKESLLR ILVQGDFSEY PDDQNMHCTA RLADMLSQFS
401: DSLQAKPKEV AEFLMDEIKI LDECKCVGLP NFIPRSAFLA ILSQHVDGIQ DKPVEFINKI WDYIEDVLSS VTAKRSDNFP QIQSSIKRAG RNLISKIKEQ
501: SVNRVMEIVE MEKLTDYTCN PEYMTSWTQK TSAQESFIDA VVKNENIPDY FSVTGFGNVK ISHLRKYHAH LLIPAFDMKM RITSYWKIVL RRIVDNLALY
601: LQLSVKSLVN TRFQKEIVAE MVDPRDGGGV EKMLEESPLV ASKREKLQNS IKLLKESKDA VAAIVDQNC

Arabidopsis Description

DRP4CDynamin-related protein 4C [Source:UniProtKB/Swiss-Prot;Acc:Q9ZP55]
SUBAcon: [mitochondrion]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.