Factsheet for Solyc01g106050.2.1

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

nucleus 2
cytosol 2
mitochondrion 1
plastid 2

Predictors

GFP

MS/MS

Papers

plastid: 20363867
plastid: 22908117
nucleus: 25464976
plastid: 26371478
nucleus: 28394025
extracellular: 29876421

msms PMID: 28394025 doi

AJM Howden, R Stam, V Martinez Heredia, GB Motion, S Ten Have, K Hodge, TM Marques Monteiro Amaro, E Huitema

Cell and Molecular Sciences, JHI, Invergowrie, Dundee, DD2 5DA, UK., Division of Plant Science, School of Life Sciences, University of Dundee at the James Hutton Institute (JHI), Invergowrie, Dundee, DD2 5DA, UK., Dundee Effector Consortium, JHI, Invergowrie, Dundee, DD2 5DA, UK., Section of Population Genetics, Technische Universität München, 85354, Freising, Germany., Wellcome Trust Centre for Gene Regulation and Expression, School of Life Sciences, University of Dundee, Dow Street, Dundee, DD1 5EH, UK.

msms PMID: 22908117 doi

C Barsan, M Zouine, E Maza, W Bian, I Egea, M Rossignol, D Bouyssie, C Pichereaux, E Purgatto, M Bouzayen, A Latché, JC Pech

Université de Toulouse, Institut National Polytechnique-Ecole Nationale Supérieure Agronomique de Toulouse, Génomique et Biotechnologie des Fruits, Castanet-Tolosan F-31326, France.

msms PMID: 20363867 doi

C Barsan, P Sanchez-Bel, C Rombaldi, I Egea, M Rossignol, M Kuntz, M Zouine, A Latché, M Bouzayen, JC Pech

Université de Toulouse, INP-ENSA Toulouse, Génomique et Biotechnologie des Fruits, Avenue de l'Agrobiopole BP 32607, F-31326 Castanet-Tolosan, France.

msms PMID: 29876421 doi

L Ceballos-Laita, E Gutierrez-Carbonell, D Takahashi, A Abadía, M Uemura, J Abadía, AF López-Millán

Cryobiofrontier Research Center, Faculty of Agriculture, Iwate University, Morioka 020-8550, Japan., Plant Stress Physiology Group, Plant Nutrition Department, Aula Dei Experimental Station, CSIC, P.O. Box 13034, 50080 Zaragoza, Spain., United Graduate School of Agricultural Sciences, Iwate University, Morioka 020-8550, Japan., USDA-ARS Children's Nutrition Research Center, Department of Pediatrics, Baylor College of Medicine, 1100 Bates St., Houston, TX 77030, USA.

msms PMID: 26371478 doi

M Suzuki, S Takahashi, T Kondo, H Dohra, Y Ito, Y Kiriiwa, M Hayashi, S Kamiya, M Kato, M Fujiwara, Y Fukao, M Kobayashi, N Nagata, R Motohashi

Faculty of Agriculture, Shizuoka University, Shizuoka city, Shizuoka, Japan., Faculty of Science, Japan Woman's University, Bunkyo-ku, Tokyo, Japan., Instrumental Research Support Office, Research Institute of Green Science and Technology, Shizuoka University, Shizuoka city, Shizuoka, Japan., The Plant Science Education Unit, Nara Institute of Science and Technology, Ikoma city, Nara, Japan.

msms PMID: 25464976 doi

Y Wang, W Wang, J Cai, Y Zhang, G Qin, S Tian

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Solyc11g043210.1.1	Tomato	nucleus	56.08	83.67
VIT_03s0038g00970.t01	Wine grape	cytosol	81.39	80.12
Solyc11g043200.1.1	Tomato	cytosol, nucleus	22.14	79.48
GSMUA_Achr8P08760_001	Banana	cytosol	65.57	70.0
Solyc11g043170.1.1	Tomato	cytosol	13.87	69.94
Zm00001d042338_P002	Maize	extracellular, mitochondrion	68.86	69.28
Os01t0920400-01	Rice	nucleus, plastid	68.86	69.19
EES04116	Sorghum	cytosol	68.73	68.99
GSMUA_Achr10P...	Banana	cytosol	64.84	68.07
TraesCS3B01G465100.3	Wheat	cytosol, plastid	66.55	68.03
TraesCS3A01G428000.2	Wheat	cytosol, plastid	66.06	67.88
TraesCS3D01G423500.1	Wheat	cytosol	66.79	67.36
HORVU3Hr1G094260.4	Barley	cytosol	66.67	67.24
Zm00001d012027_P002	Maize	cytosol	69.34	67.06
TraesCS2A01G281000.2	Wheat	cytosol	59.61	63.23
TraesCS5D01G082000.4	Wheat	cytosol	52.68	63.21
TraesCS2D01G279900.2	Wheat	cytosol	59.37	62.89
TraesCS2B01G298400.1	Wheat	cytosol	59.37	62.56
OQU81360	Sorghum	cytosol	57.18	62.17
Os04t0381000-01	Rice	cytosol	61.31	62.07
HORVU2Hr1G068810.3	Barley	cytosol	59.37	61.31
Solyc08g006600.2.1	Tomato	plastid	53.28	58.01
Zm00001d004012_P001	Maize	cytosol	52.19	39.21
Solyc05g050600.2.1	Tomato	nucleus, plastid	27.62	37.27
Solyc10g062160.1.1	Tomato	plastid	25.91	36.41
Solyc08g077360.2.1	Tomato	plastid	27.01	36.39
Solyc01g095970.2.1	Tomato	plastid	26.89	36.23
Solyc01g005310.2.1	Tomato	plastid	26.89	35.53
Solyc01g088510.2.1	Tomato	nucleus	20.19	32.42
Solyc04g072030.1.1	Tomato	cytosol	21.05	25.63
Solyc11g069980.1.1	Tomato	cytosol	20.56	21.15
Solyc01g103130.1.1	Tomato	nucleus, unclear	14.11	19.11
Solyc10g047050.1.1	Tomato	nucleus	17.03	18.16
Solyc11g039650.1.1	Tomato	cytosol, nucleus, plastid	19.34	17.3
Solyc07g063080.2.1	Tomato	plastid	15.57	15.44
Solyc11g070010.1.1	Tomato	cytosol	6.69	13.99
Solyc01g103120.2.1	Tomato	cytosol	4.62	12.88

Protein Annotations

Gene3D:1.20.120.1240	MapMan:13.6.2.1	Gene3D:2.30.29.30	Gene3D:3.40.50.300	ncoils:Coil	InterPro:Dynamin_GTPase
InterPro:Dynamin_GTPase_CS	InterPro:Dynamin_SF	InterPro:Dynamin_central	InterPro:GED	InterPro:GED_dom	GO:GO:0000166
GO:GO:0000266	GO:GO:0003674	GO:GO:0003824	GO:GO:0003924	GO:GO:0005488	GO:GO:0005515
GO:GO:0005525	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005737	GO:GO:0008017
GO:GO:0008150	GO:GO:0009987	GO:GO:0016043	GO:GO:0016787	InterPro:G_DYNAMIN_dom	InterPro:IPR011993
InterPro:IPR020850	InterPro:IPR030381	UniProt:K4B2H4	InterPro:P-loop_NTPase	PFAM:PF00350	PFAM:PF01031
PFAM:PF02212	InterPro:PH-like_dom_sf	PRINTS:PR00195	ScanProsite:PS00410	PFscan:PS51388	PFscan:PS51718
PANTHER:PTHR11566	PANTHER:PTHR11566:SF62	SMART:SM00053	SMART:SM00302	SUPFAM:SSF52540	EnsemblPlantsGene:Solyc01g106050.2
EnsemblPlants:Solyc01g106050.2.1	UniParc:UPI000276752B	SEG:seg	:	:	:

Description

No Description!

Coordinates

chr1:-:94022131..94032938

Molecular Weight (calculated)

90753.8 Da

IEP (calculated)

6.686

GRAVY (calculated)

-0.286

Length

822 amino acids

Sequence
(BLAST)

001: MAEEISPSNS PDAASAASLG HSVIPIVNKL QDIFAQLGSQ STIELPQVAV VGSQSSGKSS VLEALVGRDF LPRGSDICTR RPLVLQLLKH NSDEEYGEFL
101: HLPEKRFYDF NEIRWEIQAE TEREAGGNKG VSDKQIRLKI YSPNVLDITL VDLPGITKVP VGDQPSDIEA RIRTMIMSYI KVPSCLILAV TPANSDLANS
201: DALQIAGNAD PDGYRTIGVI TKLDIMDRGT DARNFLLGKV IPLRLGYVGI VNRNQEDITM NRSIKDALVA EEKFFRNRPV YSDLADRCGV PQLAKKLNQI
301: LVQHIKKLLP GLKSRISAGL VSVAKEHASY GEITESKAGM GALLLNILSK YSEAFSSMIE GKNEEMSTSE LSGGARIHYI FQNIFVKSLE EVDPCEDLSD
401: DDIRTAIQNA TGAKSALFVP EVPFEVLIRR QIARLMDPSF QCARFIYDEL VKMSHRCMVN ELQRFPILRK RMDEVIGNFL REGLGPSEVM IGHLIEMEMD
501: YINTSHPNFI GGTKAHEMAL QQVKSSRIAA PNPRQKDGVD LEKAPTSERS LKSRAILARS VGGFVPDQVV RPAPEVEKTT ASGSNVGSSW GISSIFGGSD
601: NRASVKDNFI NKPFSDTALS MDHAFSMIHL REPPSVLRPS ETHSDQETIE IAITKLLLRS YYDVVRKNIE DSVPKAIMHF LVNHTKRDLH NVFIKKLYRE
701: NLLEEMLQEP DEIAMKRKRT RETLRVLQQA FKTLEELPLD AETVERGYSL GTDLTGLPKI HGLPSSSMYT TSSGSTGSHT SSPKSSRLRN ASHSGELQLP
801: MYGGVDSNGG GHNAGIYPTV GV

Best Arabidopsis Sequence Match ( AT4G33650.1 )
(BLAST)

001: MTIEEVSGET PPSTPPSSST PSPSSSTTNA APLGSSVIPI VNKLQDIFAQ LGSQSTIALP QVVVVGSQSS GKSSVLEALV GRDFLPRGND ICTRRPLVLQ
101: LLQTKSRANG GSDDEWGEFR HLPETRFYDF SEIRREIEAE TNRLVGENKG VADTQIRLKI SSPNVLNITL VDLPGITKVP VGDQPSDIEA RIRTMILSYI
201: KQDTCLILAV TPANTDLANS DALQIASIVD PDGHRTIGVI TKLDIMDKGT DARKLLLGNV VPLRLGYVGV VNRCQEDILL NRTVKEALLA EEKFFRSHPV
301: YHGLADRLGV PQLAKKLNQI LVQHIKVLLP DLKSRISNAL VATAKEHQSY GELTESRAGQ GALLLNFLSK YCEAYSSLLE GKSEEMSTSE LSGGARIHYI
401: FQSIFVKSLE EVDPCEDLTD DDIRTAIQNA TGPRSALFVP DVPFEVLVRR QISRLLDPSL QCARFIFEEL IKISHRCMMN ELQRFPVLRK RMDEVIGDFL
501: REGLEPSEAM IGDIIDMEMD YINTSHPNFI GGTKAVEAAM HQVKSSRIPH PVARPKDTVE PDRTSSSTSQ VKSRSFLGRQ ANGIVTDQGV VSADAEKAQP
601: AANASDTRWG IPSIFRGGDT RAVTKDSLLN KPFSEAVEDM SHNLSMIYLK EPPAVLRPTE THSEQEAVEI QITKLLLRSY YDIVRKNIED SVPKAIMHFL
701: VNHTKRELHN VFIKKLYREN LFEEMLQEPD EIAVKRKRTQ ETLHVLQQAY RTLDELPLEA DSVSAGMSKH QELLTSSKYS TSSSYSASPS TTRRSRRAGD
801: QHQNGYGF

Arabidopsis Description

DRP3ANOXY15 [Source:UniProtKB/TrEMBL;Acc:A0A178UUQ6]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.