Factsheet for Solyc01g005310.2.1

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

nucleus 1
cytosol 4
mitochondrion 2

Predictors

GFP

MS/MS

Papers

Winner Takes All:	plastid
Any Predictor:	cytosol, mitochondrion, nucleus
BaCelLo:	nucleus
EpiLoc:	cytosol
MultiLoc:	cytosol
Plant-mPloc:	mitochondrion
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	cytosol

plastid: 20363867
plastid: 22908117

msms PMID: 22908117 doi

C Barsan, M Zouine, E Maza, W Bian, I Egea, M Rossignol, D Bouyssie, C Pichereaux, E Purgatto, M Bouzayen, A Latché, JC Pech

Université de Toulouse, Institut National Polytechnique-Ecole Nationale Supérieure Agronomique de Toulouse, Génomique et Biotechnologie des Fruits, Castanet-Tolosan F-31326, France.

msms PMID: 20363867 doi

C Barsan, P Sanchez-Bel, C Rombaldi, I Egea, M Rossignol, M Kuntz, M Zouine, A Latché, M Bouzayen, JC Pech

Université de Toulouse, INP-ENSA Toulouse, Génomique et Biotechnologie des Fruits, Avenue de l'Agrobiopole BP 32607, F-31326 Castanet-Tolosan, France.

PPI

Inferred distinct locusB in Crop

locusB	locations
Solyc05g010460.2.1
Solyc05g010470.2.1
Solyc10g078790.1.1

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT1G14830.1	Solyc05g010460.2.1	AT1G13520.1	21798944
AT1G14830.1	Solyc05g010470.2.1	AT1G13520.1	21798944
AT1G14830.1	Solyc10g078790.1.1	AT5G57460.1	24529374

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
PGSC0003DMT400051417	Potato	cytosol	83.44	93.85
VIT_01s0011g05800.t01	Wine grape	cytosol	83.44	84.67
AT1G14830.1	Thale cress	cytosol	82.64	83.71
GSMUA_Achr7P11190_001	Banana	cytosol	82.32	83.66
GSMUA_Achr2P21630_001	Banana	cytosol	81.83	83.58
CDX84001	Canola	cytosol	82.32	83.39
CDY52026	Canola	cytosol	82.32	83.39
Bra016679.1-P	Field mustard	cytosol	81.99	83.06
Bra026801.1-P	Field mustard	cytosol	81.67	82.74
CDX81675	Canola	cytosol	81.67	82.74
CDY33737	Canola	cytosol	81.67	82.74
Zm00001d013426_P002	Maize	plasma membrane	81.19	82.65
Zm00001d033751_P003	Maize	plasma membrane	80.87	82.32
KXG37727	Sorghum	cytosol, mitochondrion	80.87	82.19
KRH41722	Soybean	endoplasmic reticulum, nucleus	81.03	81.69
KRH60421	Soybean	endoplasmic reticulum	80.87	81.52
Os03t0713100-01	Rice	plasma membrane	80.06	81.51
TraesCS4D01G047600.1	Wheat	golgi, nucleus, unclear	79.1	80.66
TraesCS4B01G047700.1	Wheat	cytosol	79.1	80.66
TraesCS4A01G266600.1	Wheat	cytosol	79.1	80.66
KRH70357	Soybean	endoplasmic reticulum, nucleus	79.9	80.42
KRH49665	Soybean	endoplasmic reticulum	79.1	79.61
Solyc01g088510.2.1	Tomato	nucleus	63.67	77.34
HORVU4Hr1G007880.11	Barley	cytosol	76.69	75.12
Solyc10g062160.1.1	Tomato	plastid	69.61	74.02
Solyc08g077360.2.1	Tomato	plastid	69.77	71.15
Solyc05g050600.2.1	Tomato	nucleus, plastid	67.52	68.97
Solyc01g095970.2.1	Tomato	plastid	66.88	68.2
Solyc11g043200.1.1	Tomato	cytosol, nucleus	15.43	41.92
Solyc11g043170.1.1	Tomato	cytosol	10.77	41.1
Solyc08g006600.2.1	Tomato	plastid	32.8	27.02
Solyc01g106050.2.1	Tomato	plastid	35.53	26.89
Solyc01g103130.1.1	Tomato	nucleus, unclear	23.63	24.22
Solyc04g072030.1.1	Tomato	cytosol	26.21	24.15
Solyc11g039650.1.1	Tomato	cytosol, nucleus, plastid	28.94	19.59
Solyc11g069980.1.1	Tomato	cytosol	23.31	18.15
Solyc10g047050.1.1	Tomato	nucleus	20.26	16.34
Solyc07g063080.2.1	Tomato	plastid	19.61	14.72
Solyc11g043210.1.1	Tomato	nucleus	12.7	14.34
Solyc11g070010.1.1	Tomato	cytosol	6.91	10.94
Solyc01g103120.2.1	Tomato	cytosol	4.82	10.17

Protein Annotations

Gene3D:1.20.120.1240	MapMan:22.1.7.1	Gene3D:3.40.50.300	InterPro:Dynamin_GTPase	InterPro:Dynamin_GTPase_CS	InterPro:Dynamin_SF
InterPro:Dynamin_central	InterPro:GED	InterPro:GED_dom	GO:GO:0000166	GO:GO:0000266	GO:GO:0003674
GO:GO:0003824	GO:GO:0003924	GO:GO:0005488	GO:GO:0005515	GO:GO:0005525	GO:GO:0005575
GO:GO:0005622	GO:GO:0005623	GO:GO:0005737	GO:GO:0005886	GO:GO:0005938	GO:GO:0007005
GO:GO:0007275	GO:GO:0008017	GO:GO:0008150	GO:GO:0009504	GO:GO:0009506	GO:GO:0009987
GO:GO:0010152	GO:GO:0016020	GO:GO:0016043	GO:GO:0016787	InterPro:G_DYNAMIN_dom	InterPro:IPR020850
InterPro:IPR030381	UniProt:K4AS98	InterPro:P-loop_NTPase	PFAM:PF00350	PFAM:PF01031	PFAM:PF02212
PRINTS:PR00195	ScanProsite:PS00410	PFscan:PS51388	PFscan:PS51718	PANTHER:PTHR11566	PANTHER:PTHR11566:SF80
SMART:SM00053	SMART:SM00302	SUPFAM:SSF52540	EnsemblPlantsGene:Solyc01g005310.2	EnsemblPlants:Solyc01g005310.2.1	UniParc:UPI0002761AC1
SEG:seg	:	:	:	:	:

Description

Dynamin-related protein 1C [Source:Projected from Arabidopsis thaliana (AT1G14830) UniProtKB/Swiss-Prot;Acc:Q8LF21]

Coordinates

chr1:-:220580..225903

Molecular Weight (calculated)

69222.2 Da

IEP (calculated)

7.041

GRAVY (calculated)

-0.321

Length

622 amino acids

Sequence
(BLAST)

001: MATLESLIGL VNRIQRACTI LGDHGGEGMS LWEALPTVAV VGGQSSGKSS VLESVVGRDF LPRGSGIVTR RPLVLQLHKT DGGAEYAEFL HAPKKKFPEF
101: AAVRQEIADE TDRITGKSKQ ISNVPIHLSI FSPNVVDLTL IDLPGLTKVA VEGQPESIVE DIEMMVRSYV EKPNCIILAI SPANQDIATS DAIKLAREVD
201: PSGERTFGVI TKLDLMDQGT NALDVLEGRS YKLQHPWVGV VNRSQADINK SVDMMAARRK ELEYFESSPE YGHLAHKMGA EYLAKLLSKH LETVIRQRIP
301: SIIALINKTI DELNAELDRI GRPIGVDGGA QLYTILEMCR AFDRIFREHL EGGRPGGDRI YGVFDHQLPS ALKKLPFDRH LSTSNVKKVI SEADGYQPHL
401: IAPEQGYRRL IDGSLGFFKG PAEASVDAVH VILKELVRKS LAETQELKRF PSLQSDIAAA ANDALDRFRD ESRKTVSRLV EMESSYLTVE FFRKLQTEPE
501: KLPGNQTPAQ EKAQAQAQAA SNVDRYSDNH LRRIGSNVSA YINMVCETLR NTIPKAVVFC QVREARKSLL NQFYSQIGRR EKEELGKMLD EDPALMGKRE
601: TIAKRLELYK SARDEIDAVA WK

Best Arabidopsis Sequence Match ( AT1G14830.1 )
(BLAST)

001: MATMKSLIGL INKIQRACTV LGDHGGEGMS LWEALPTVAV VGGQSSGKSS VLESVVGRDF LPRGSGIVTR RPLVLQLHKT EDGTTEYAEF LHAPKKRFAD
101: FAAVRKEIED ETDRITGKSK QISNIPIQLS IYSPNVVNLT LIDLPGLTKV AVDGQPESIV QDIENMVRSY VEKPNCIILA ISPANQDIAT SDAIKLAREV
201: DPTGERTFGV ATKLDIMDKG TDCLDVLEGR SYRLQHPWVG IVNRSQADIN KRVDMIAARR KEQEYFETSP EYGHLASRMG SEYLAKLLSQ HLETVIRQKI
301: PSIVALINKS IDEINAELDR IGRPIAVDSG AQLYTILELC RAFDRVFKEH LDGGRPGGDR IYGVFDHQLP AALKKLPFDR HLSTKNVQKV VSEADGYQPH
401: LIAPEQGYRR LIDGSISYFK GPAEATVDAV HFVLKELVRK SISETEELKR FPTLASDIAA AANEALERFR DESRKTVLRL VDMESSYLTV EFFRKLHLEP
501: EKEKPNPRNA PAPNADPYSD NHFRKIGSNV SAYINMVCDT LRNSLPKAVV YCQVREAKRS LLNFFYAQVG RKEKEKLGAM LDEDPQLMER RGTLAKRLEL
601: YKQARDDIDA VAWK

Arabidopsis Description

DRP1CDRP1C [Source:UniProtKB/TrEMBL;Acc:A0A178W4V6]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.