Factsheet for VIT_01s0011g05800.t01

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 1
cytosol 4
mitochondrion 2

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, mitochondrion, nucleus
BaCelLo:	nucleus
EpiLoc:	cytosol
MultiLoc:	cytosol
Plant-mPloc:	mitochondrion
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	cytosol

PPI

Inferred distinct locusB in Crop

locusB	locations
VIT_01s0011g02320.t01
VIT_01s0011g02330.t01
VIT_11s0052g00920.t01
VIT_13s0067g00550.t01

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT1G14830.1	VIT_01s0011g02320.t01	AT1G13520.1	21798944
AT1G14830.1	VIT_01s0011g02330.t01	AT1G13520.1	21798944
AT1G14830.1	VIT_13s0067g00550.t01	AT2G40060.1	18502847
AT1G14830.1	VIT_11s0052g00920.t01	AT5G57460.1	24529374

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
GSMUA_Achr2P21630_001	Banana	cytosol	85.16	85.71
GSMUA_Achr7P11190_001	Banana	cytosol	84.67	84.8
KRH60421	Soybean	endoplasmic reticulum	85.32	84.77
KRH41722	Soybean	endoplasmic reticulum, nucleus	85.16	84.6
Bra016679.1-P	Field mustard	cytosol	84.5	84.36
CDX84001	Canola	cytosol	84.5	84.36
CDY52026	Canola	cytosol	84.5	84.36
AT1G14830.1	Thale cress	cytosol	84.5	84.36
Bra026801.1-P	Field mustard	cytosol	84.34	84.2
CDX81675	Canola	cytosol	84.34	84.2
CDY33737	Canola	cytosol	84.34	84.2
Solyc01g005310.2.1	Tomato	plastid	84.67	83.44
Zm00001d013426_P002	Maize	plasma membrane	83.03	83.31
Zm00001d033751_P003	Maize	plasma membrane	82.38	82.65
KXG37727	Sorghum	cytosol, mitochondrion	82.38	82.52
Os03t0713100-01	Rice	plasma membrane	82.22	82.49
KRH49665	Soybean	endoplasmic reticulum	82.71	82.04
KRH70357	Soybean	endoplasmic reticulum, nucleus	82.54	81.88
VIT_15s0021g00480.t01	Wine grape	cytosol	81.89	81.1
VIT_02s0012g00740.t01	Wine grape	cytosol	81.08	81.08
PGSC0003DMT400051417	Potato	cytosol	73.08	81.01
TraesCS4A01G266600.1	Wheat	cytosol	80.59	80.98
TraesCS4B01G047700.1	Wheat	cytosol	80.59	80.98
TraesCS4D01G047600.1	Wheat	golgi, nucleus, unclear	80.59	80.98
HORVU4Hr1G007880.11	Barley	cytosol	78.3	75.59
VIT_02s0025g01570.t01	Wine grape	cytosol, extracellular	69.0	69.46
VIT_15s0046g00470.t01	Wine grape	cytosol	68.52	68.4
VIT_04s0008g07010.t01	Wine grape	cytosol	28.87	27.31
VIT_03s0038g00970.t01	Wine grape	cytosol	37.19	27.31
VIT_15s0107g00170.t01	Wine grape	cytosol	9.46	24.68
VIT_00s0267g00020.t01	Wine grape	cytosol	6.04	23.57
VIT_19s0015g02240.t01	Wine grape	golgi, mitochondrion, plasma membrane	9.3	21.51
VIT_18s0089g00350.t01	Wine grape	cytosol	29.36	19.33
VIT_12s0035g01740.t01	Wine grape	cytosol	28.55	19.02
VIT_19s0014g02500.t01	Wine grape	plastid	21.21	15.51
VIT_12s0055g00490.t01	Wine grape	cytosol	19.25	15.27
VIT_03s0110g00120.t01	Wine grape	cytosol	4.24	10.53
VIT_02s0087g00010.t01	Wine grape	cytosol	3.1	10.22
VIT_03s0038g00540.t01	Wine grape	cytosol	2.61	9.09

Protein Annotations

Gene3D:1.20.120.1240	EntrezGene:100261017	wikigene:100261017	MapMan:22.1.7.1	Gene3D:3.40.50.300	EMBL:AM475687
ProteinID:CAN64005	ProteinID:CAN64005.1	ProteinID:CBI26827	ProteinID:CBI26827.3	UniProt:D7T8K6	InterPro:Dynamin_GTPase
InterPro:Dynamin_GTPase_CS	InterPro:Dynamin_SF	InterPro:Dynamin_central	EMBL:FN595752	InterPro:GED	InterPro:GED_dom
GO:GO:0000166	GO:GO:0000266	GO:GO:0003674	GO:GO:0003824	GO:GO:0003924	GO:GO:0005488
GO:GO:0005515	GO:GO:0005525	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005737
GO:GO:0005886	GO:GO:0005938	GO:GO:0007005	GO:GO:0007275	GO:GO:0008017	GO:GO:0008150
GO:GO:0009504	GO:GO:0009506	GO:GO:0009987	GO:GO:0010152	GO:GO:0016020	GO:GO:0016043
GO:GO:0016787	InterPro:G_DYNAMIN_dom	InterPro:IPR020850	InterPro:IPR030381	EntrezGene:LOC100261017	wikigene:LOC100261017
InterPro:P-loop_NTPase	PFAM:PF00350	PFAM:PF01031	PFAM:PF02212	PRINTS:PR00195	ScanProsite:PS00410
PFscan:PS51388	PFscan:PS51718	PANTHER:PTHR11566	PANTHER:PTHR11566:SF80	SMART:SM00053	SMART:SM00302
SUPFAM:SSF52540	UniParc:UPI00015C8A5A	ArrayExpress:VIT_01s0011g05800	EnsemblPlantsGene:VIT_01s0011g05800	EnsemblPlants:VIT_01s0011g05800.t01	RefSeq:XP_002284919
RefSeq:XP_002284919.1	SEG:seg	:	:	:	:

Description

No Description!

Coordinates

chr1:+:5571749..5580136

Molecular Weight (calculated)

68747.6 Da

IEP (calculated)

7.272

GRAVY (calculated)

-0.359

Length

613 amino acids

Sequence
(BLAST)

001: MATMESLIGL VNRIQRACTV LGDHGGEGMS LWEALPSVAV VGGQSSGKSS VLESVVGRDF LPRGSGIVTR RPLVLQLHKT EQGQAEYGEF LHAPKKKFTD
101: FASVRKEIQD ETDRITGKTK HISNIPIHLS IYSPNVVDLT LIDLPGMTKV AVEGQPDSIV EDIDNMVRSY VEKPNCIILA ISPANQDIAT SDAIKLAREV
201: DPTGERTFGV LTKLDLMDKG TNALDVLEGR SYRLQHPWVG IVNRSQADIN KNVDMIAARQ KEREYFESSP EYGHLAHKMG SEYLAKLLSQ HLESVIRQRI
301: PSIIALINKT IDELNAELDR IGRPIAVDSG AQLYTILEMC RAFDRVFKEH LDGGRAGGDK IYGVFDHQLP AALKKLPFDR HLSLQNVRKV VSEADGYQPH
401: LIAPEQGYRR LIDGSLSFFK GPAEASVDAV HFVLKELVRK SIAETQELKR FPSLTADIAA AATEALERFR EESRKTVLRL VEMESSYLTV DFFRKQQFET
501: EKQEKNANPS GPNMDRYTEI HLRRIGSNVS GYISMICETM KNSIPKAVVY CQVREAKRSL LSHFYAQLGR REKEQLGSML DEDPALMEKR QAIAKRLELY
601: KSARDEIDSV SWK

Best Arabidopsis Sequence Match ( AT1G14830.1 )
(BLAST)

001: MATMKSLIGL INKIQRACTV LGDHGGEGMS LWEALPTVAV VGGQSSGKSS VLESVVGRDF LPRGSGIVTR RPLVLQLHKT EDGTTEYAEF LHAPKKRFAD
101: FAAVRKEIED ETDRITGKSK QISNIPIQLS IYSPNVVNLT LIDLPGLTKV AVDGQPESIV QDIENMVRSY VEKPNCIILA ISPANQDIAT SDAIKLAREV
201: DPTGERTFGV ATKLDIMDKG TDCLDVLEGR SYRLQHPWVG IVNRSQADIN KRVDMIAARR KEQEYFETSP EYGHLASRMG SEYLAKLLSQ HLETVIRQKI
301: PSIVALINKS IDEINAELDR IGRPIAVDSG AQLYTILELC RAFDRVFKEH LDGGRPGGDR IYGVFDHQLP AALKKLPFDR HLSTKNVQKV VSEADGYQPH
401: LIAPEQGYRR LIDGSISYFK GPAEATVDAV HFVLKELVRK SISETEELKR FPTLASDIAA AANEALERFR DESRKTVLRL VDMESSYLTV EFFRKLHLEP
501: EKEKPNPRNA PAPNADPYSD NHFRKIGSNV SAYINMVCDT LRNSLPKAVV YCQVREAKRS LLNFFYAQVG RKEKEKLGAM LDEDPQLMER RGTLAKRLEL
601: YKQARDDIDA VAWK

Arabidopsis Description

DRP1CDRP1C [Source:UniProtKB/TrEMBL;Acc:A0A178W4V6]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.