Factsheet for VIT_12s0055g00490.t01

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 1
cytosol 4
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, mitochondrion, nucleus
BaCelLo:	nucleus
MultiLoc:	cytosol
Plant-mPloc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
PGSC0003DMT400014025	Potato	cytosol	84.61	84.82
Solyc10g047050.1.1	Tomato	nucleus	84.22	84.44
KRH42202	Soybean	nucleus	81.11	83.49
GSMUA_Achr10P...	Banana	cytosol	70.12	79.82
AT3G19720.1	Thale cress	cytosol	79.3	78.89
CDY33414	Canola	cytosol	79.17	78.76
Bra038229.1-P	Field mustard	cytosol	79.17	77.86
CDY42203	Canola	cytosol	79.17	77.86
KRH58326	Soybean	plasma membrane	44.5	68.94
VIT_02s0012g00740.t01	Wine grape	cytosol	15.78	19.9
VIT_15s0021g00480.t01	Wine grape	cytosol	15.65	19.55
VIT_15s0046g00470.t01	Wine grape	cytosol	15.39	19.38
VIT_01s0011g05800.t01	Wine grape	cytosol	15.27	19.25
VIT_02s0025g01570.t01	Wine grape	cytosol, extracellular	15.01	19.05
VIT_15s0107g00170.t01	Wine grape	cytosol	5.56	18.3
VIT_00s0267g00020.t01	Wine grape	cytosol	3.49	17.2
VIT_19s0015g02240.t01	Wine grape	golgi, mitochondrion, plasma membrane	5.56	16.23
VIT_04s0008g07010.t01	Wine grape	cytosol	13.58	16.2
VIT_03s0038g00970.t01	Wine grape	cytosol	17.46	16.17
VIT_19s0014g02500.t01	Wine grape	plastid	16.95	15.63
VIT_18s0089g00350.t01	Wine grape	cytosol	14.23	11.82
VIT_12s0035g01740.t01	Wine grape	cytosol	13.84	11.63
VIT_03s0110g00120.t01	Wine grape	cytosol	2.72	8.5
VIT_03s0038g00540.t01	Wine grape	cytosol	1.81	7.95
VIT_02s0087g00010.t01	Wine grape	cytosol	1.68	6.99

Protein Annotations

EntrezGene:100253726	wikigene:100253726	MapMan:13.6.1.3	Gene3D:3.40.50.300	ProteinID:CCB46140	ProteinID:CCB46140.1
ncoils:Coil	InterPro:Dynamin_GTPase	InterPro:Dynamin_SF	UniProt:F6H1S1	EMBL:FN595228	GO:GO:0000166
GO:GO:0003674	GO:GO:0003824	GO:GO:0003924	GO:GO:0005488	GO:GO:0005515	GO:GO:0005525
GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005737	GO:GO:0005777	GO:GO:0007623
GO:GO:0008017	GO:GO:0008150	GO:GO:0009507	GO:GO:0009536	GO:GO:0009707	GO:GO:0009987
GO:GO:0010020	GO:GO:0016020	GO:GO:0016043	GO:GO:0016559	GO:GO:0016787	GO:GO:0042802
InterPro:G_DYNAMIN_dom	InterPro:IPR030381	EntrezGene:LOC100253726	wikigene:LOC100253726	InterPro:P-loop_NTPase	PFAM:PF00350
PRINTS:PR00195	PFscan:PS51718	PANTHER:PTHR11566	PANTHER:PTHR11566:SF78	SMART:SM00053	SUPFAM:SSF52540
UniParc:UPI00015CB921	ArrayExpress:VIT_12s0055g00490	EnsemblPlantsGene:VIT_12s0055g00490	EnsemblPlants:VIT_12s0055g00490.t01	unigene:Vvi.5414	RefSeq:XP_002266729
RefSeq:XP_002266729.1	SEG:seg	:	:	:	:

Description

No Description!

Coordinates

chr12:+:13459908..13482854

Molecular Weight (calculated)

87084.5 Da

IEP (calculated)

6.278

GRAVY (calculated)

-0.299

Length

773 amino acids

Sequence
(BLAST)

001: MVRDEDADGA SSQMEKQWRL YEAYNELHGL AQEFETPFDA PAVLVVGHQT DGKSALVEAL MGFQFNHVGG GTKTRRPITL HMKYDPDCEA PLCHLLSDSD
101: PTVPQEMSLQ EIQAYIEAEN MRLEREPCQF SAKEIIIRVE YKYCPNLTII DTPGLVAPAP GRKNRALQSQ ARAVESLVRA KMQHKEFIIL CLEDCSDWSN
201: ATTRRVVMQI DPELSRTVIV STKLDTKIPQ FARASDVEVF LSPPACTLDG FILGDSPFFT SVPSGRVGSG PESIYRSNDE FKQAILLREM EDIASLEEKL
301: GRLLSEQERS RIGVSKLRLF LEELLQKRYM DSVPLIIPLL EKEYRGTTRK LNDLNRELST LDEAKLKEKG RTFHDLFLTK LSLLLKGTVV APPEKFGETL
401: QDERVNGGAF VGTDGLQFPQ KLIPNAGMRL YGGAQYHRAM AEFRFVVGGI KCPPITREEI VNACGVEDIH DGTNYSRTAC VIAVAKARDT FEPFLHQLGC
501: RLLHILKRLL PISVFLLQKD GEYLSGHEVF LRRVASAFNN FAESTERECH EKCMEDLVST TRYVTWSLHN KNRAGLRQFL DSFGGTEQSA ASGNSISAGL
601: AQESSFGSVT NDKQDIKPKA DVKLSHLASG IDSATCAQTT ETRLADLLDN TLWNRRLAPS SERIVYALVQ QIFHGIREYF LASAELKFNC FLLMPVVDKL
701: PALLREDLES AFEDDLDNVF DITNLRHSLG VRKRDTEIEL KRIQRLKEKF RQIHEQLCLH QVMSKLPPVS VSH

Best Arabidopsis Sequence Match ( AT3G19720.1 )
(BLAST)

001: MAEVSAKSVT VEEMAEEDDA AIEERWSLYE AYNELHALAQ ELETPFEAPA VLVVGQQTDG KSALVEALMG FQFNHVGGGT KTRRPITLHM KYDPQCQFPL
101: CHLGSDDDPS VSLPKSLSQI QAYIEAENMR LEQEPCSPFS AKEIIVKVQY KYCPNLTIID TPGLIAPAPG LKNRALQVQA RAVEALVRAK MQHKEFIILC
201: LEDSSDWSIA TTRRIVMQVD PELSRTIVVS TKLDTKIPQF SCSSDVEVFL SPPASALDSS LLGDSPFFTS VPSGRVGYGQ DSVYKSNDEF KQAVSLREME
301: DIASLEKKLG RLLTKQEKSR IGISKLRLFL EELLWKRYKE SVPLIIPLLG KEYRSTVRKL DTVSKELSSL DEAKLKERGR TFHDLFLTKL SLLLKGTVVA
401: PPDKFGETLQ DERTQGGAFV GTDGLQFSHK LIPNAGMRLY GGAQYHRAMA EFRFLVGAIK CPPITREEIV NACGVEDIHD GTNYSRTACV IAVAKARETF
501: EPFLHQLGAR LLHILKRLLP ISVYLLQKEG EYLSGHEVFL KRVASAFNSF VESTEKSCRD KCMEDLASTT RYVTWSLHNK NRAGLRQFLD SFGGTEHNTT
601: SGNAIGFSLP QDALGGTTDT KSRSDVKLSH LASNIDSGSS IQTTEMRLAD LLDSTLWNRK LAPSSERIVY ALVQQIFQGI REYFLASAEL KFNCFLLMPI
701: VDKLPALLRE ELENAFEDDL DSIFDITNLR QSLDQKKRST EIELRRIKRI KEKFRVMNEK LNSHEFAQNL KAPSVQH

Arabidopsis Description

ARC5Dynamin-like protein ARC5 [Source:UniProtKB/Swiss-Prot;Acc:Q84N64]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.