CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: endoplasmic reticulum, nucleus

Predictor Summary:

nucleus 1
cytosol 3
plastid 2
mitochondrion 3

Predictors

GFP

MS/MS

Papers

nucleus: 21132161
endoplasmic reticulum: 27224218

msms PMID: 21132161 doi

B Cooper, KB Campbell, J Feng, WM Garrett, R Frederick

Soybean Genomics and Improvement Laboratory, USDA-ARS, Beltsville, MD 20705, USA. bret.cooper@ars.usda.gov

msms PMID: 27224218 doi

X Wang, S Komatsu

Graduate School of Life and Environmental Sciences, University of Tsukuba , Tsukuba 305-8572, Japan., National Institute of Crop Science, National Agriculture and Food Research Organization , Tsukuba 305-8518, Japan.

PPI

Inferred distinct locusB in Crop

locusB	locations
KRG90331
KRH02873
KRH63067
KRH71091
KRH71102

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT1G14830.1	KRH63067	AT1G13520.1	21798944
AT1G14830.1	KRH71091	AT1G13520.1	21798944
AT1G14830.1	KRH71102	AT1G13520.1	21798944
AT1G14830.1	KRG90331	AT5G57460.1	24529374
AT1G14830.1	KRH02873	AT5G57460.1	24529374

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH49665	Soybean	endoplasmic reticulum	98.22	98.22
KRH60421	Soybean	endoplasmic reticulum	87.7	87.84
KRH41722	Soybean	endoplasmic reticulum, nucleus	87.06	87.2
CDX84001	Canola	cytosol	83.82	84.36
CDY52026	Canola	cytosol	83.66	84.2
AT1G14830.1	Thale cress	cytosol	83.66	84.2
Bra026801.1-P	Field mustard	cytosol	83.5	84.04
CDX81675	Canola	cytosol	83.5	84.04
CDY33737	Canola	cytosol	83.5	84.04
Bra016679.1-P	Field mustard	cytosol	83.33	83.88
VIT_01s0011g05800.t01	Wine grape	cytosol	81.88	82.54
Zm00001d013426_P002	Maize	plasma membrane	81.55	82.49
KXG37727	Sorghum	cytosol, mitochondrion	81.39	82.19
GSMUA_Achr2P21630_001	Banana	cytosol	80.91	82.1
Zm00001d033751_P003	Maize	plasma membrane	81.07	82.0
Os03t0713100-01	Rice	plasma membrane	80.42	81.34
GSMUA_Achr7P11190_001	Banana	cytosol	80.26	81.05
TraesCS4D01G047600.1	Wheat	golgi, nucleus, unclear	78.96	80.0
TraesCS4B01G047700.1	Wheat	cytosol	78.96	80.0
TraesCS4A01G266600.1	Wheat	cytosol	78.96	80.0
Solyc01g005310.2.1	Tomato	plastid	80.42	79.9
PGSC0003DMT400051417	Potato	cytosol	69.26	77.4
KRH48908	Soybean	cytosol, nucleus	75.73	75.73
KRH46533	Soybean	cytosol, endoplasmic reticulum, nucleus	75.08	75.32
KRH66384	Soybean	cytosol, endoplasmic reticulum	75.24	75.24
HORVU4Hr1G007880.11	Barley	cytosol	77.02	74.96
KRH04285	Soybean	cytosol	69.26	69.93
KRH41321	Soybean	endoplasmic reticulum, nucleus	66.18	67.05
KRH60047	Soybean	endoplasmic reticulum	66.18	67.05
KRH77654	Soybean	endoplasmic reticulum	66.02	66.89
KRH27831	Soybean	cytosol, endoplasmic reticulum, nucleus	65.86	66.72
KRH47905	Soybean	cytosol, endoplasmic reticulum	64.72	65.68
KRH06461	Soybean	cytosol	51.13	60.89
KRH49844	Soybean	plastid	35.28	26.85
KRH42074	Soybean	endoplasmic reticulum, nucleus	35.28	26.78
KRH10618	Soybean	plastid	34.95	26.25
KRH21736	Soybean	nucleus	34.79	26.03
KRH62781	Soybean	nucleus	33.98	25.7
KRH21193	Soybean	cytosol	20.55	25.6
KRH42928	Soybean	cytosol	22.49	23.21
KRH21190	Soybean	cytosol	24.43	22.71
KRH59040	Soybean	cytosol	24.27	22.22
KRH11082	Soybean	cytosol	5.02	21.23
KRH36411	Soybean	endoplasmic reticulum, nucleus	29.29	19.63
KRH51295	Soybean	endoplasmic reticulum	28.96	19.58
KRH01870	Soybean	endoplasmic reticulum	28.8	19.47
KRH27552	Soybean	cytosol	28.96	19.41
KRH42202	Soybean	nucleus	20.06	16.51
KRH55251	Soybean	plastid	20.06	15.6
KRH26094	Soybean	plastid	19.9	15.3
KRH58326	Soybean	plasma membrane	8.74	10.82

Protein Annotations

Gene3D:1.20.120.1240	EntrezGene:100809639	MapMan:22.1.7.1	Gene3D:3.40.50.300	EMBL:ACUP02000767	InterPro:Dynamin_GTPase
InterPro:Dynamin_GTPase_CS	InterPro:Dynamin_SF	InterPro:Dynamin_central	InterPro:GED	InterPro:GED_dom	EnsemblPlantsGene:GLYMA_02G085700
GO:GO:0000166	GO:GO:0000266	GO:GO:0003674	GO:GO:0003824	GO:GO:0003924	GO:GO:0005488
GO:GO:0005515	GO:GO:0005525	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005737
GO:GO:0008017	GO:GO:0008150	GO:GO:0009987	GO:GO:0016043	GO:GO:0016787	InterPro:G_DYNAMIN_dom
UniProt:I1JDI1	InterPro:IPR020850	InterPro:IPR030381	EnsemblPlants:KRH70357	ProteinID:KRH70357	ProteinID:KRH70357.1
InterPro:P-loop_NTPase	PFAM:PF00350	PFAM:PF01031	PFAM:PF02212	PRINTS:PR00195	ScanProsite:PS00410
PFscan:PS51388	PFscan:PS51718	PANTHER:PTHR11566	PANTHER:PTHR11566:SF80	SMART:SM00053	SMART:SM00302
SUPFAM:SSF52540	UniParc:UPI0002337341	SEG:seg	:	:	:

Description

hypothetical protein

Coordinates

chr2:+:7461444..7476490

Molecular Weight (calculated)

69019.0 Da

IEP (calculated)

7.495

GRAVY (calculated)

-0.336

Length

618 amino acids

Sequence
(BLAST)

001: MATMTSLIGL INKIQRACTV LGDHGGEGMS LWEALPTVAV VGGQSSGKSS VLESVVGRDF LPRGSGIVTR RPLVLQLHKT DDGQQEYAEF LHASRKRFTD
101: FAAVRQEISD ETDRITGKTK AISNVPIQLS IYSPNVVNLT LIDLPGLTKV AVEGQSDTIV QDIENMVRSY VEKPNCIILA ISPANQDIAT SDAIKIAREV
201: DPSGERTFGV VTKLDLMDKG TNAVEVLEGR QYKLQHPWVG IVNRSQADIN KNVDMIVARK KEREYFETSP EYGHLAHKMG AEYLAKLLSE HLEYVIRMKI
301: PSIIALINKA IDELNAELDR IGRPIAVDSG AKLYTILQMC RAFDKVFKEH LDGGRPGGDR IYGVFDHQLP AALKKLPFNR HLSSKNVEKV VMEADGYQPH
401: LIAPEQGYRR LIEGSIGYFK GPAEASVDAV HLILKELVRK SIAATEELKR FPTLQADIAA AANDALERFR DESRRTVTRM VDMESAYLTV EFFRKMHLEP
501: EKNADQKNPS RNNPNPPVDS YTDTHLSKIG SNVNGYINMV LDTLKNSIPK AVVHCQVREA KRSLLNHFYV QVGRREKDQL GALLDEDPAL MEKRAQLAKR
601: LELYKQAMDD IDSVAWNK

Best Arabidopsis Sequence Match ( AT1G14830.1 )
(BLAST)

001: MATMKSLIGL INKIQRACTV LGDHGGEGMS LWEALPTVAV VGGQSSGKSS VLESVVGRDF LPRGSGIVTR RPLVLQLHKT EDGTTEYAEF LHAPKKRFAD
101: FAAVRKEIED ETDRITGKSK QISNIPIQLS IYSPNVVNLT LIDLPGLTKV AVDGQPESIV QDIENMVRSY VEKPNCIILA ISPANQDIAT SDAIKLAREV
201: DPTGERTFGV ATKLDIMDKG TDCLDVLEGR SYRLQHPWVG IVNRSQADIN KRVDMIAARR KEQEYFETSP EYGHLASRMG SEYLAKLLSQ HLETVIRQKI
301: PSIVALINKS IDEINAELDR IGRPIAVDSG AQLYTILELC RAFDRVFKEH LDGGRPGGDR IYGVFDHQLP AALKKLPFDR HLSTKNVQKV VSEADGYQPH
401: LIAPEQGYRR LIDGSISYFK GPAEATVDAV HFVLKELVRK SISETEELKR FPTLASDIAA AANEALERFR DESRKTVLRL VDMESSYLTV EFFRKLHLEP
501: EKEKPNPRNA PAPNADPYSD NHFRKIGSNV SAYINMVCDT LRNSLPKAVV YCQVREAKRS LLNFFYAQVG RKEKEKLGAM LDEDPQLMER RGTLAKRLEL
601: YKQARDDIDA VAWK

Arabidopsis Description

DRP1CDRP1C [Source:UniProtKB/TrEMBL;Acc:A0A178W4V6]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.