Factsheet for PGSC0003DMT400064541

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 1
cytosol 4
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, mitochondrion, nucleus
BaCelLo:	nucleus
MultiLoc:	cytosol
Plant-mPloc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
PGSC0003DMT400064491	Potato	cytosol	61.27	94.7
PGSC0003DMT400064542	Potato	cytosol	97.55	88.44
Solyc04g072030.1.1	Tomato	cytosol	94.61	85.78
PGSC0003DMT400095128	Potato	cytosol	54.25	75.63
PGSC0003DMT400072601	Potato	cytosol	69.44	68.66
PGSC0003DMT400088564	Potato	cytosol	13.24	65.85
PGSC0003DMT400050652	Potato	cytosol	63.4	63.09
KRH11082	Soybean	cytosol	14.05	58.9
KRH42928	Soybean	cytosol	55.72	56.93
KRH21190	Soybean	cytosol	59.15	54.44
CDY36456	Canola	cytosol	16.5	54.3
KRH59040	Soybean	cytosol	59.64	54.07
CDY34117	Canola	cytosol	46.41	53.79
CDY03289	Canola	cytosol	46.41	53.79
CDY53047	Canola	cytosol	8.5	53.61
KRH21193	Soybean	cytosol	43.3	53.43
CDY47217	Canola	cytosol	42.81	50.97
CDY47216	Canola	cytosol	44.61	50.74
AT1G60530.1	Thale cress	cytosol	24.67	50.17
Zm00001d028497_P001	Maize	cytosol	51.14	50.16
Bra027151.1-P	Field mustard	cytosol	55.23	50.07
TraesCS4D01G217900.1	Wheat	cytosol	53.92	49.77
PGSC0003DMT400094747	Potato	cytosol	33.5	49.64
Os03t0260000-01	Rice	cytosol	54.58	49.26
CDY53046	Canola	cytosol	54.25	49.26
CDY53048	Canola	cytosol	40.03	49.0
TraesCS4B01G217700.1	Wheat	cytosol	50.82	48.75
Zm00001d028495_P001	Maize	cytosol	53.59	48.66
EER95148	Sorghum	cytosol	53.76	48.6
AT1G60500.1	Thale cress	mitochondrion	52.61	48.13
HORVU4Hr1G061820.3	Barley	plastid	53.43	48.09
CDY34120	Canola	cytosol	51.14	47.86
KXG39737	Sorghum	cytosol	50.98	47.71
GSMUA_Achr8P19650_001	Banana	cytosol, mitochondrion	43.3	47.58
CDY24536	Canola	cytosol	50.65	47.4
Bra031502.1-P	Field mustard	cytosol	50.65	47.4
TraesCS4A01G086700.1	Wheat	cytosol	51.31	47.29
Bra031505.1-P	Field mustard	cytosol	43.79	46.85
CDY02039	Canola	cytosol, plastid	42.32	46.33
Os04t0129900-01	Rice	cytosol	50.65	45.32
TraesCS4D01G098800.1	Wheat	cytosol	50.33	45.03
TraesCS4A01G213700.1	Wheat	cytosol	42.81	44.26
Bra010250.1-P	Field mustard	cytosol	26.31	40.76
CDY23281	Canola	cytosol	25.65	39.65
PGSC0003DMT400065607	Potato	cytosol	10.95	32.68
CDY24530	Canola	cytosol, nucleus, plasma membrane	24.84	23.97
Bra031511.1-P	Field mustard	cytosol	24.18	23.95
PGSC0003DMT400004319	Potato	cytosol	21.41	21.34
PGSC0003DMT400028286	Potato	cytosol	21.24	21.24
PGSC0003DMT400004655	Potato	cytosol	20.91	20.98
PGSC0003DMT400051417	Potato	cytosol	18.46	20.43
PGSC0003DMT400000646	Potato	cytosol	20.26	20.33
PGSC0003DMT400004228	Potato	cytosol	7.68	16.61
PGSC0003DMT400014025	Potato	cytosol	14.87	11.8
PGSC0003DMT400032399	Potato	plastid	14.87	11.03

Protein Annotations

Gene3D:1.20.120.1240	Gene3D:3.40.50.300	MapMan:35.1	InterPro:Dynamin_GTPase	InterPro:Dynamin_SF	InterPro:Dynamin_central
InterPro:GED	InterPro:GED_dom	GO:GO:0000166	GO:GO:0003674	GO:GO:0003824	GO:GO:0003924
GO:GO:0005488	GO:GO:0005525	GO:GO:0016787	InterPro:G_DYNAMIN_dom	InterPro:IPR020850	InterPro:IPR030381
UniProt:M1CCJ4	InterPro:P-loop_NTPase	PFAM:PF00350	PFAM:PF01031	PFAM:PF02212	EnsemblPlantsGene:PGSC0003DMG400025079
PGSC:PGSC0003DMG400025079	EnsemblPlants:PGSC0003DMT400064541	PRINTS:PR00195	PFscan:PS51388	PFscan:PS51718	PANTHER:PTHR11566
PANTHER:PTHR11566:SF135	SMART:SM00053	SMART:SM00302	SUPFAM:SSF52540	UniParc:UPI0002967943	SEG:seg

Description

Interferon-induced GTP-binding protein mx [Source:PGSC_GENE;Acc:PGSC0003DMG400025079]

Coordinates

chr4:+:61310818..61312959

Molecular Weight (calculated)

69234.2 Da

IEP (calculated)

5.191

GRAVY (calculated)

-0.176

Length

612 amino acids

Sequence
(BLAST)

001: MAYQNTNGCI SDSIEILDPK PLAAAACDVV HPPTRVPLVM RLQNDPNITA PNLQLEYNNK SLPVDEIGIA DAIVLATDEI AGHGKGISNY PLTLVVKKNG
101: VPDLTMVDLP GITRVAVQGQ PEDIYEQVYD IIMKYIVPEE SIILNVLSAT VDFPTCESIR MSQKVDKTGE RTLAVVTKAD KTTEGLLEKV TADEVNIGLG
201: YVCVRNRIGN ESYEEARSDE QRLFSTHPLL SKIDKSMVSV PILAQKLVRI QASIISKCLP EIVRKINDKL ALNLAELNRL PQHLTSVAEA LTAFMRILSS
301: SKDSLKKILL SGEFDEYPDE KEMHSAARIV EMLNEYSSEL HSKNFEEVDE FLMEDIMVLQ ETKGIGLPNF LPRAVFLNVL QRKVKEIAAS PEDFVGKLWN
401: YLERVVIIVL MYHCENYPQL QSSTRRAAQN LIAKKKNESV DWVREIIGME KLTDYTCNPD YLTTYSKFMA QQHMFMEIMN DHGKCSVINL EGVGEIDVGH
501: LRKHLDVVQQ AFDLKMRMMA YWKIVLMRLV DSMALHIMFS IRNMINNEME NEIIQDLMAP HGGGIERMLD ESPLVAEKRN RLKKSVKLLK ESKEVVANIM
601: DRISHYDDHE SD

Best Arabidopsis Sequence Match ( AT1G60500.1 )
(BLAST)

001: MVKKKVATKK NSPSLAIAKK KSRSNKDVVS VEAPIISSYN DRIRPLLDTV DRLRNLNVMR EGIHLPTIVV VGDQSSGKSS VLESLAGISL PRGQGICTRV
101: PLVMRLQRSS SPEPEIWLEY NDKVVPTDEE HIAEAIRAAT DVIAGSGKGV SDAPLTLHVK KAGVPDLTMV DLPGITRVPV NGQPENIYEQ ISGMIMEYIE
201: PQESIILNVL SATVDFTTCE SIRMSRKVDK TGQRTLAVVT KADMAPEGLL QKVTADDVSI VLGYVCVRNR IGEETYEEAR MQEELLFRTH PVLSLIDEDI
301: VGIPVLAQKL MLIQSSMIAR CLPKIVSKIN QKLDTAVLEL NKLPMVMAST GEALMALMDI IGSAKESLLR ILVQGDFSEY PDDQNMHCTA RLADMLSQFS
401: DSLQAKPKEV AEFLMDEIKI LDECKCVGLP NFIPRSAFLA ILSQHVDGIQ DKPVEFINKI WDYIEDVLSS VTAKRSDNFP QIQSSIKRAG RNLISKIKEQ
501: SVNRVMEIVE MEKLTDYTCN PEYMTSWTQK TSAQESFIDA VVKNENIPDY FSVTGFGNVK ISHLRKYHAH LLIPAFDMKM RITSYWKIVL RRIVDNLALY
601: LQLSVKSLVN TRFQKEIVAE MVDPRDGGGV EKMLEESPLV ASKREKLQNS IKLLKESKDA VAAIVDQNC

Arabidopsis Description

DRP4CDynamin-related protein 4C [Source:UniProtKB/Swiss-Prot;Acc:Q9ZP55]
SUBAcon: [mitochondrion]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.