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Potato
Subcellular Localization
min:
: max

 
Winner_takes_all: cytosol

Predictor Summary:
  • nucleus 1
  • cytosol 4
  • mitochondrion 1
PPI
No PPI Data
Homology

Paralog

locusIdentityHomology Identity

Ortholog

locusHomology SpeciesLocationIdentityHomology Identity
PGSC0003DMT400064491 Potato cytosol 54.9 60.86
PGSC0003DMT400064541 Potato cytosol 75.63 54.25
KRH11082 Soybean cytosol 18.0 54.11
PGSC0003DMT400072601 Potato cytosol 70.84 50.24
PGSC0003DMT400064542 Potato cytosol 76.08 49.48
CDY36456 Canola cytosol 19.82 46.77
CDY03289 Canola cytosol 51.03 42.42
CDY34117 Canola cytosol 51.03 42.42
KRH42928 Soybean cytosol 56.04 41.07
PGSC0003DMT400050652 Potato cytosol 56.95 40.65
KRH21190 Soybean cytosol 58.77 38.8
KRH59040 Soybean cytosol 59.45 38.67
PGSC0003DMT400094747 Potato cytosol 35.76 38.01
Zm00001d028497_P001 Maize cytosol 52.62 37.02
CDY47216 Canola cytosol 44.65 36.43
TraesCS4B01G217700.1 Wheat cytosol 51.71 35.58
TraesCS4D01G217900.1 Wheat cytosol 53.53 35.44
Bra027151.1-P Field mustard cytosol 54.21 35.26
CDY34120 Canola cytosol 51.94 34.86
Bra031502.1-P Field mustard cytosol 51.71 34.71
CDY24536 Canola cytosol 51.71 34.71
CDY53046 Canola cytosol 53.08 34.57
HORVU4Hr1G061820.3 Barley plastid 53.53 34.56
AT1G60500.1 Thale cress mitochondrion 52.62 34.53
Os03t0260000-01 Rice cytosol 52.85 34.22
TraesCS4A01G086700.1 Wheat cytosol 51.25 33.89
Zm00001d028495_P001 Maize cytosol 51.71 33.68
EER95148 Sorghum cytosol 51.94 33.68
KRH21193 Soybean cytosol 38.04 33.67
CDY53048 Canola cytosol 38.27 33.6
AT1G60530.1 Thale cress cytosol 23.01 33.55
CDY02039 Canola cytosol, plastid 42.6 33.45
CDY53047 Canola cytosol 7.29 32.99
KXG39737 Sorghum cytosol 48.97 32.87
Bra031505.1-P Field mustard cytosol 42.82 32.87
GSMUA_Achr8P19650_001 Banana cytosol, mitochondrion 41.69 32.85
Os04t0129900-01 Rice cytosol 50.34 32.31
TraesCS4D01G098800.1 Wheat cytosol 50.11 32.16
CDY47217 Canola cytosol 37.36 31.91
TraesCS4A01G213700.1 Wheat cytosol 42.14 31.25
PGSC0003DMT400088564 Potato cytosol 8.66 30.89
Bra010250.1-P Field mustard cytosol 22.55 25.06
CDY23281 Canola cytosol 22.1 24.49
Bra031511.1-P Field mustard cytosol 25.06 17.8
CDY24530 Canola cytosol, nucleus, plasma membrane 25.06 17.35
PGSC0003DMT400051417 Potato cytosol 19.82 15.73
PGSC0003DMT400004319 Potato cytosol 21.64 15.47
PGSC0003DMT400000646 Potato cytosol 21.41 15.41
PGSC0003DMT400004655 Potato cytosol 20.96 15.08
PGSC0003DMT400028286 Potato cytosol 20.96 15.03
PGSC0003DMT400004228 Potato cytosol 8.43 13.07
PGSC0003DMT400014025 Potato cytosol 16.86 9.6
PGSC0003DMT400032399 Potato plastid 15.49 8.24
PGSC0003DMT400065607 Potato cytosol 2.96 6.34
Protein Annotations
Gene3D:3.40.50.300MapMan:35.1ncoils:CoilInterPro:Dynamin_SFInterPro:Dynamin_centralInterPro:GED
InterPro:GED_domGO:GO:0000166GO:GO:0003674GO:GO:0003824GO:GO:0003924GO:GO:0005488
GO:GO:0005525GO:GO:0016787InterPro:G_DYNAMIN_domInterPro:IPR020850InterPro:IPR030381UniProt:M1DVN0
InterPro:P-loop_NTPasePFAM:PF00350PFAM:PF01031PFAM:PF02212EnsemblPlantsGene:PGSC0003DMG400044699PGSC:PGSC0003DMG400044699
EnsemblPlants:PGSC0003DMT400095128PFscan:PS51388PFscan:PS51718PANTHER:PTHR11566PANTHER:PTHR11566:SF135SUPFAM:SSF52540
UniParc:UPI00029662E7:::::
Description
Interferon-induced GTP-binding protein mx [Source:PGSC_GENE;Acc:PGSC0003DMG400044699]
Coordinates
chr10:-:55876916..55878306
Molecular Weight (calculated)
50412.9 Da
IEP (calculated)
6.091
GRAVY (calculated)
-0.194
Length
439 amino acids
Sequence
(BLAST)
001: MIDLPGISRV PVQGQPEDIY EQIFDIIKTY ISPQETIILN VLSTTVDFPT CESIRMSQKV DKTGERTLAV VTKGDIAPEG LLEKVIADEV NIRLGYICVR
101: NRIENETYEE ARKNEAKLFS THPLLSKIDK SMVGVPVLAQ KLVFIQANII SKFLSEIERK INDKLATNMA ELNRLPQHLS SVAVMRILTK LVEMLDQYSN
201: ELHSKNFDEK EDFLMEEIKA LEETNGIGLP NFLPRHLFLS AMQKRVKEVA LIPEDFVDRV WNYIERIVME VLMHHCENYP QLQSSTRRAA QNLIVKKKNE
301: SVEWVKEIIG MEKQTDYTCN PGYLATYNKL TGQQQTFMEI IYNPGKVSVV SLKGLGQIDG HLRKHLGLVQ QAFDMKMRVI AYWKIVLMRL VDSMALHIMF
401: TIQKMINKDM EEEIVQELMA PRGGGIERML DEPPMIAEK
Best Arabidopsis Sequence Match ( AT1G60500.1 )
(BLAST)
001: MVKKKVATKK NSPSLAIAKK KSRSNKDVVS VEAPIISSYN DRIRPLLDTV DRLRNLNVMR EGIHLPTIVV VGDQSSGKSS VLESLAGISL PRGQGICTRV
101: PLVMRLQRSS SPEPEIWLEY NDKVVPTDEE HIAEAIRAAT DVIAGSGKGV SDAPLTLHVK KAGVPDLTMV DLPGITRVPV NGQPENIYEQ ISGMIMEYIE
201: PQESIILNVL SATVDFTTCE SIRMSRKVDK TGQRTLAVVT KADMAPEGLL QKVTADDVSI VLGYVCVRNR IGEETYEEAR MQEELLFRTH PVLSLIDEDI
301: VGIPVLAQKL MLIQSSMIAR CLPKIVSKIN QKLDTAVLEL NKLPMVMAST GEALMALMDI IGSAKESLLR ILVQGDFSEY PDDQNMHCTA RLADMLSQFS
401: DSLQAKPKEV AEFLMDEIKI LDECKCVGLP NFIPRSAFLA ILSQHVDGIQ DKPVEFINKI WDYIEDVLSS VTAKRSDNFP QIQSSIKRAG RNLISKIKEQ
501: SVNRVMEIVE MEKLTDYTCN PEYMTSWTQK TSAQESFIDA VVKNENIPDY FSVTGFGNVK ISHLRKYHAH LLIPAFDMKM RITSYWKIVL RRIVDNLALY
601: LQLSVKSLVN TRFQKEIVAE MVDPRDGGGV EKMLEESPLV ASKREKLQNS IKLLKESKDA VAAIVDQNC
Arabidopsis Description
DRP4CDynamin-related protein 4C [Source:UniProtKB/Swiss-Prot;Acc:Q9ZP55]
SUBAcon: [mitochondrion]
Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.