CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 1
cytosol 4
mitochondrion 2

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, mitochondrion, nucleus
BaCelLo:	nucleus
EpiLoc:	cytosol
MultiLoc:	cytosol
Plant-mPloc:	mitochondrion
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	cytosol

PPI

Inferred distinct locusB in Crop

locusB	locations
EER88160
EER99172
EES01270
EES05560
EES19921
KXG25176
KXG37622
OQU78880
OQU80812

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT5G42080.1	KXG37622	AT1G08560.1	19959995
AT5G42080.1	OQU78880	AT1G08560.1	19959995
AT5G42080.1	EER88160	AT1G59610.1	20231465
AT5G42080.1	EES05560	AT1G59610.1	20231465
AT5G42080.1	KXG25176	AT1G59610.1	20231465
AT5G42080.1	EER99172	AT5G13300.1	15923323
AT5G42080.1	OQU80812	AT5G13300.1	15923323
AT5G42080.1	EES01270	AT5G42080.1	19144001
AT5G42080.1	EES19921	AT5G42080.1	19144001
AT5G42080.1	EES01270	AT5G42080.1	20231465
AT5G42080.1	EES19921	AT5G42080.1	20231465

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Os05t0556100-01	Rice	plasma membrane	94.75	94.75
TraesCS1A01G385400.2	Wheat	cytosol, golgi, nucleus, unclear	93.1	93.1
TraesCS1D01G393000.2	Wheat	cytosol	93.1	93.1
TraesCS1B01G411700.3	Wheat	cytosol	92.94	92.94
Zm00001d038955_P001	Maize	cytosol, mitochondrion, plasma membrane	98.85	89.85
GSMUA_Achr8P27540_001	Banana	cytosol	88.51	88.51
VIT_02s0025g01570.t01	Wine grape	cytosol, extracellular	87.52	87.52
GSMUA_Achr6P26600_001	Banana	cytosol	87.36	87.36
EES01270	Sorghum	cytosol	86.7	86.7
KRH41321	Soybean	endoplasmic reticulum, nucleus	86.21	86.07
KRH60047	Soybean	endoplasmic reticulum	86.04	85.9
Solyc05g050600.2.1	Tomato	nucleus, plastid	85.88	85.88
PGSC0003DMT400000646	Potato	cytosol	85.39	85.25
Solyc01g095970.2.1	Tomato	plastid	85.22	85.08
CDY25074	Canola	cytosol	85.06	84.92
CDX67862	Canola	cytosol	85.06	84.92
Bra003469.1-P	Field mustard	cytosol	80.13	84.87
AT3G61760.1	Thale cress	cytosol	84.89	84.75
CDX67529	Canola	cytosol	84.73	84.59
CDY13364	Canola	cytosol	84.56	84.43
Bra028525.1-P	Field mustard	cytosol	84.56	84.43
KRH77654	Soybean	endoplasmic reticulum	84.56	84.43
CDY27661	Canola	cytosol	84.24	84.1
KRH27831	Soybean	cytosol, endoplasmic reticulum, nucleus	84.24	84.1
AT5G42080.1	Thale cress	cytosol	84.07	83.93
HORVU1Hr1G084970.2	Barley	plasma membrane	93.1	83.88
CDX99702	Canola	cytosol	83.74	83.61
Bra025448.1-P	Field mustard	cytosol	79.97	83.53
KRH47905	Soybean	cytosol, endoplasmic reticulum	83.25	83.25
KRH06461	Soybean	cytosol	66.34	77.84
KXG37727	Sorghum	cytosol, mitochondrion	69.13	68.79
KXG38886	Sorghum	cytosol	68.97	66.67
EER98546	Sorghum	cytosol	66.67	65.06
EES04116	Sorghum	cytosol	37.44	27.84
OQU81360	Sorghum	cytosol	34.32	27.65
EER95148	Sorghum	cytosol	25.94	23.34
KXG39737	Sorghum	cytosol	23.65	22.02
KXG25176	Sorghum	cytosol	25.12	20.35
EER88160	Sorghum	cytosol, endoplasmic reticulum, nucleus	28.24	18.84
EES05560	Sorghum	nucleus	28.24	18.68
EES03602	Sorghum	plastid	21.84	16.12
EES16755	Sorghum	cytosol	19.05	15.32

Protein Annotations

Gene3D:1.20.120.1240	MapMan:22.1.7.1	Gene3D:3.40.50.300	EntrezGene:8063568	UniProt:C5YVE3	InterPro:Dynamin_GTPase
InterPro:Dynamin_GTPase_CS	InterPro:Dynamin_SF	InterPro:Dynamin_central	EnsemblPlants:EES19921	ProteinID:EES19921	ProteinID:EES19921.1
InterPro:GED	InterPro:GED_dom	GO:GO:0000166	GO:GO:0000266	GO:GO:0003674	GO:GO:0003824
GO:GO:0003924	GO:GO:0005488	GO:GO:0005515	GO:GO:0005525	GO:GO:0005575	GO:GO:0005622
GO:GO:0005623	GO:GO:0005737	GO:GO:0008017	GO:GO:0008150	GO:GO:0009987	GO:GO:0016043
GO:GO:0016787	InterPro:G_DYNAMIN_dom	InterPro:IPR020850	InterPro:IPR030381	InterPro:P-loop_NTPase	PFAM:PF00350
PFAM:PF01031	PFAM:PF02212	PRINTS:PR00195	ScanProsite:PS00410	PFscan:PS51388	PFscan:PS51718
PANTHER:PTHR11566	PANTHER:PTHR11566:SF138	SMART:SM00053	SMART:SM00302	EnsemblPlantsGene:SORBI_3009G226400	SUPFAM:SSF52540
unigene:Sbi.15150	UniParc:UPI0001A89252	RefSeq:XP_002441491.1	SEG:seg	:	:

Description

hypothetical protein

Coordinates

chr9:-:56796639..56803516

Molecular Weight (calculated)

68799.0 Da

IEP (calculated)

8.074

GRAVY (calculated)

-0.351

Length

609 amino acids

Sequence
(BLAST)

001: MDNLITLVNK LQRACTALGD HGEESALPTL WDSLPAIAVV GGQSSGKSSV LESVVGKDFL PRGSGIVTRR PLVLQLHRID GDREYAEFMH LPRKRFTDFA
101: AVRKEIADET DRETGRSKQI STVPIHLSIF SPHVVNLTLI DLPGLTKVAV EGQPESIVQD IENMVRSYIE KPNCIILAVS PANQDLATSD AIKISREVDP
201: KGERTFGVLT KIDLMDKGTD AVDILEGRAY RLQTPWVGVV NRSQQDINKN VDMIAARRRE REYFATTPEY KHMASRMGSE YLGKMLSKHL EQVIKSRIPG
301: LQSLITKTIA ELETELNRLG KPIANDAGGK LYTIMEICRM FDSIYKEHLD GVRPGGEKVY HVFDNQFPVA IKRLQFDKQL SMENVRKLIT EADGYQPHLI
401: APEQGYRRLI ESCLISIRGP AEAAVDAVHA ILKDLVRKAI NETHELKQFP TLRVEVGNAA FESLDRMRDE SKKNTLKLVD MECSYLTVDF FRKLPQDVEK
501: GGNPSHSIFD RYNDSYLRRI GQTVLSYVNM VCSTLRNSIP KSIVYCQVRE AKRSLLDHFF TELGAREMKQ LSKLLDEDPA VMERRTNLAK RLELYRSAQS
601: EIDAVAWSK

Best Arabidopsis Sequence Match ( AT5G42080.1 )
(BLAST)

001: MENLISLVNK IQRACTALGD HGDSSALPTL WDSLPAIAVV GGQSSGKSSV LESIVGKDFL PRGSGIVTRR PLVLQLQKID DGTREYAEFL HLPRKKFTDF
101: AAVRKEIQDE TDRETGRSKA ISSVPIHLSI YSPNVVNLTL IDLPGLTKVA VDGQSDSIVK DIENMVRSYI EKPNCIILAI SPANQDLATS DAIKISREVD
201: PSGDRTFGVL TKIDLMDKGT DAVEILEGRS FKLKYPWVGV VNRSQADINK NVDMIAARKR EREYFSNTTE YRHLANKMGS EHLAKMLSKH LERVIKSRIP
301: GIQSLINKTV LELETELSRL GKPIAADAGG KLYSIMEICR LFDQIFKEHL DGVRAGGEKV YNVFDNQLPA ALKRLQFDKQ LAMDNIRKLV TEADGYQPHL
401: IAPEQGYRRL IESSIVSIRG PAEASVDTVH AILKDLVHKS VNETVELKQY PALRVEVTNA AIESLDKMRE GSKKATLQLV DMECSYLTVD FFRKLPQDVE
501: KGGNPTHSIF DRYNDSYLRR IGSNVLSYVN MVCAGLRNSI PKSIVYCQVR EAKRSLLDHF FAELGTMDMK RLSSLLNEDP AIMERRSAIS KRLELYRAAQ
601: SEIDAVAWSK

Arabidopsis Description

DRP1ARSW9 [Source:UniProtKB/TrEMBL;Acc:A0A178UEJ4]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.