CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 3
cytosol 2
golgi 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, golgi, mitochondrion, nucleus
BaCelLo:	nucleus
MultiLoc:	cytosol
Plant-mPloc:	golgi, nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	cytosol

PPI

Inferred distinct locusB in Crop

locusB	locations
EER87742
EER99172
EES01270
EES19921
KXG37970
OQU79534
OQU80812
OQU86127

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT5G13300.1	KXG37970	AT3G63300.1	19363154
AT5G13300.1	OQU79534	AT3G63300.1	19363154
AT5G13300.1	EER99172	AT5G13300.1	15743878
AT5G13300.1	OQU80812	AT5G13300.1	15743878
AT5G13300.1	EER87742	AT5G26980.1	15743878
AT5G13300.1	OQU86127	AT5G26980.1	15743878
AT5G13300.1	EES01270	AT5G42080.1	15923323
AT5G13300.1	EES19921	AT5G42080.1	15923323

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Zm00001d021087_P003	Maize	cytosol	96.77	96.65
Os09t0510700-01	Rice	cytosol	89.47	89.47
TraesCS5B01G292200.1	Wheat	cytosol	88.04	88.25
TraesCS5A01G293000.1	Wheat	cytosol	87.32	87.85
TraesCS5D01G300300.2	Wheat	cytosol	87.8	87.38
HORVU5Hr1G077570.15	Barley	cytosol	86.48	86.38
CDX70496	Canola	cytosol	52.27	79.02
OQU80812	Sorghum	cytosol	76.32	77.43
GSMUA_Achr11P...	Banana	cytosol	74.16	75.98
GSMUA_Achr4P00060_001	Banana	cytosol	73.92	73.84
Solyc12g042180.1.1	Tomato	cytosol	19.38	72.32
KRH45201	Soybean	cytosol	70.33	71.45
VIT_01s0150g00030.t01	Wine grape	cytosol	69.98	70.31
CDY09784	Canola	cytosol	66.87	70.05
AT5G13300.1	Thale cress	cytosol	68.66	69.41
PGSC0003DMT400005756	Potato	cytosol	67.7	69.28
Solyc05g023750.2.1	Tomato	cytosol	67.22	68.79
KRH01512	Soybean	cytosol	69.02	68.77
CDX69650	Canola	cytosol	67.94	68.77
Bra006193.1-P	Field mustard	cytosol	66.87	68.76
CDX78515	Canola	cytosol	68.18	68.59
Bra008838.1-P	Field mustard	cytosol	67.7	68.52
GSMUA_Achr7P22530_001	Banana	endoplasmic reticulum	59.57	67.3
Solyc03g118260.1.1	Tomato	cytosol	59.33	62.0
VIT_17s0000g00310.t01	Wine grape	cytosol	61.24	61.91
AT5G61980.1	Thale cress	cytosol	60.77	61.35
CDY00242	Canola	cytosol	57.42	60.99
Bra010046.1-P	Field mustard	cytosol	56.34	59.54
Bra029295.1-P	Field mustard	cytosol	61.36	59.51
CDY30689	Canola	cytosol	61.24	59.4
PGSC0003DMT400036762	Potato	cytosol	40.91	58.56
CDX86943	Canola	cytosol	49.28	57.87
KRH59741	Soybean	cytosol	54.19	56.62
Solyc12g042170.1.1	Tomato	cytosol	36.6	56.46
KRH63858	Soybean	cytosol	52.63	56.05
KRH54108	Soybean	cytosol	44.02	49.86
CDY53619	Canola	cytosol	18.54	45.99
OQU85359	Sorghum	cytosol, mitochondrion, plastid	43.54	43.38
EER99548	Sorghum	cytosol	11.6	20.51
EER91883	Sorghum	cytosol	7.78	15.97
EER90493	Sorghum	cytosol	7.54	15.14
EER92462	Sorghum	mitochondrion	8.01	14.66
CDY08879	Canola	cytosol	2.75	7.3

Protein Annotations

Gene3D:1.20.1270.60	Gene3D:1.25.40.20	MapMan:22.3.4.1	Gene3D:3.30.40.160	EntrezGene:8054803	InterPro:AGD1/2/3/4_BAR_plant
InterPro:AH/BAR_dom_sf	InterPro:ARFGAP/RecO	InterPro:Ankyrin_rpt	InterPro:Ankyrin_rpt-contain_dom	InterPro:Ankyrin_rpt-contain_sf	InterPro:ArfGAP_dom
InterPro:ArfGAP_dom_sf	InterPro:BAR_dom	UniProt:C5X5B2	ncoils:Coil	EnsemblPlants:EER99172	ProteinID:EER99172
ProteinID:EER99172.1	GO:GO:0003674	GO:GO:0005096	GO:GO:0005488	GO:GO:0005515	GO:GO:0005575
GO:GO:0005622	GO:GO:0005623	GO:GO:0005737	GO:GO:0008150	GO:GO:0030234	GO:GO:0043547
GO:GO:0046872	InterPro:IPR001164	InterPro:IPR001849	InterPro:IPR002110	InterPro:IPR004148	InterPro:IPR020683
InterPro:IPR027267	InterPro:IPR036770	InterPro:IPR038508	PFAM:PF00169	PFAM:PF01412	PFAM:PF12796
PFAM:PF16746	InterPro:PH_domain	PRINTS:PR00405	PFscan:PS50003	PFscan:PS50088	PFscan:PS50115
PFscan:PS50297	PANTHER:PTHR23180	PANTHER:PTHR23180:SF242	SMART:SM00105	SMART:SM00233	SMART:SM00248
SMART:SM00721	EnsemblPlantsGene:SORBI_3002G260700	SUPFAM:SSF103657	SUPFAM:SSF48403	SUPFAM:SSF50729	SUPFAM:SSF57863
unigene:Sbi.20690	UniParc:UPI0001A83C17	RefSeq:XP_002462651.1	SEG:seg	:	:

Description

hypothetical protein

Coordinates

chr2:-:64577954..64584960

Molecular Weight (calculated)

93770.6 Da

IEP (calculated)

7.342

GRAVY (calculated)

-0.531

Length

836 amino acids

Sequence
(BLAST)

001: MFFSRLDDSP MFRKQMQSLE EGADLLRERC LKFHKGCRKY TEGLGEAYDG DIAFASSLET FGGGHNDPIS VAFGGPVMTK FTIALREIGT YKEVLRSQVE
101: HMLNDKLLQF VEIDLHEMKD ARKRFDKATL LYDQAREKYL SLKKGTRTDV AAAVEDELHS ARSSFEQARF NLVTALSNIE AKKRFEFLEA VSGTMDAHLR
201: YFKQGYELLH QMEPYINQVL AFAQQSRERS NYEQAALLER MQDFKRQIDR ESRWSPNGMN DSPNGDGIQT IGRSSHKMIE EAMQSASKGK VQTIRQGYLS
301: KRSSNLRGDW KRRFFVLDSR GMLYYYRKQN SRPSSGYNQR TSIPSEHGSG LLSRWFSSHY HGGVHDEKSV ARHTVNLLTS TIKVDADQSD LRFCFRIISP
401: TKNYTLQAES AMDQMDWIEK ITGVIASLLS SQSPERRLLL SPKGSSHHRT ASSSSSFSSS TELEHSINED CMLEKNSGSG YFEHSARVAQ HHRTSMMKPD
501: KPIDLLRKVA GNNSCADCGA SEPDWASLNL GVLLCIECSG VHRNMGVHIS KVRSLTLDVR VWEPSVINLF QSIGNTFANT VWEEMLPSST CVDHGDISRP
601: DGLENMSHRF APSKPKQSDS IAVKEKFIHA KYAEKDFVRK HNVDEIQLAE QMWDNVSSNN KKGVYSLIVG SNADVNFSYG HTSFNSALTL GKALLLQEQS
701: TSPSNGSSRC FDLNPLEKGS TGDSVSPAST SARIDGLDDY VEGLSLLHLA CRVADLGMVE LLLQYGANVN STDSRGRTPL HHSIMKGRHV YAKLLLSRGA
801: DSQAVDRDGR TALKYAIDSG TIEDEEILVL LEDPSR

Best Arabidopsis Sequence Match ( AT5G13300.1 )
(BLAST)

001: MHFTKLDDSP MFRKQLQSME ESAEILRERS LKFYKGCRKY TEGLGEAYDG DIAFASALET FGGGHNDPIS VAFGGPVMTK FTIALREIGT YKEVLRSQVE
101: HILNDRLLQF ANMDLHEVKE ARKRFDKASL TYDQAREKFL SLRKGTKSDV AAALEQELHT SRSMFEQARF NLVTALSNVE AKKRFEFLEA VSGTMDAHLR
201: YFKQGYELLH QMEPYINQVL TYAQQSRERS NYEQAALNEK MQEYKRQVDR ESRWGSNGSN GSPNGDGIQA IGRSSHKMID AVMQSAARGK VQTIRQGYLS
301: KRSSNLRGDW KRRFFVLDSR GMLYYYRKQC SKPSGSGSQL SGQRNSSELG SGLLSRWLSS NNHGHGGVHD EKSVARHTVN LLTSTIKVDA DQSDLRFCFR
401: IISPTKNYTL QAESALDQMD WIEKITGVIA SLLSSQVPEQ RLPGSPMGSG HHRSASESSS YESSEYDHPT TEEFVCERSF LGYNERPSRS FQPQRSIRKG
501: EKPIDALRKV CGNDKCADCG APEPDWASLN LGVLVCIECS GVHRNLGVHI SKVRSLTLDV KVWEPSVISL FQALGNTFAN TVWEELLHSR SAIHFDPGLT
601: VSDKSRVMVT GKPSYADMIS IKEKYIQAKY AEKLFVRRSR DSDFPQSAAQ QMWDAVSGND KKAVYRLIVN GDADVNYVYD QTSSSSLTLS RVILVPERPK
701: REDVLLRLRN ELLDRTGSSS NISPEGSGGS SLLHCACEKA DLGMVELLLQ YGANVNASDS SGQTPLHCCL LRGKVTIARL LLTRGADPEA MNREGKTALD
801: IAAESNFTDP EVLALLSDTN GYNHRQC

Arabidopsis Description

AGD3ADP-ribosylation factor GTPase-activating protein AGD3 [Source:UniProtKB/Swiss-Prot;Acc:Q5W7F2]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.