Factsheet for PGSC0003DMT400036762

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 2
endoplasmic reticulum 1
cytosol 3
golgi 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
PGSC0003DMT400037443	Potato	cytosol	25.51	73.04
Solyc03g118260.1.1	Tomato	cytosol	98.12	71.62
PGSC0003DMT400037441	Potato	cytosol	39.55	67.54
Zm00001d009353_P001	Maize	cytosol	10.27	49.59
Zm00001d015981_P001	Maize	peroxisome	12.33	47.06
GSMUA_Achr7P22530_001	Banana	endoplasmic reticulum	59.59	47.03
PGSC0003DMT400076862	Potato	cytosol	10.1	45.74
PGSC0003DMT400005756	Potato	cytosol	63.36	45.29
CDX86943	Canola	cytosol	55.14	45.22
VIT_17s0000g00310.t01	Wine grape	cytosol	61.3	43.29
GSMUA_Achr11P...	Banana	cytosol	60.45	43.26
Zm00001d004245_P003	Maize	cytosol	13.87	42.19
PGSC0003DMT400068809	Potato	plastid	15.58	42.13
GSMUA_Achr4P00060_001	Banana	cytosol	59.76	41.7
Bra010046.1-P	Field mustard	cytosol	56.34	41.59
CDY00242	Canola	cytosol	55.65	41.3
TraesCS5A01G293000.1	Wheat	cytosol	58.73	41.28
Os09t0510700-01	Rice	cytosol	59.08	41.27
TraesCS5B01G292200.1	Wheat	cytosol	58.9	41.25
Zm00001d021087_P003	Maize	cytosol	59.08	41.22
HORVU5Hr1G077570.15	Barley	cytosol	58.73	40.98
EER99172	Sorghum	cytosol	58.56	40.91
TraesCS5D01G300300.2	Wheat	cytosol	58.73	40.83
AT5G61980.1	Thale cress	cytosol	57.02	40.22
Os08t0537600-01	Rice	plasma membrane	56.68	39.83
Zm00001d049872_P001	Maize	cytosol	37.16	39.53
PGSC0003DMT400013119	Potato	cytosol	13.87	38.94
TraesCS7A01G263800.2	Wheat	cytosol	54.79	38.88
HORVU7Hr1G055220.21	Barley	cytosol	55.14	38.75
OQU80812	Sorghum	cytosol	54.62	38.71
Zm00001d031667_P006	Maize	cytosol	54.45	38.64
CDY30689	Canola	cytosol	56.34	38.17
Bra029295.1-P	Field mustard	cytosol	56.16	38.05
TraesCS7B01G161800.1	Wheat	endoplasmic reticulum	54.79	37.78
TraesCS7D01G264700.1	Wheat	endoplasmic reticulum	54.79	37.78
Zm00001d049871_P001	Maize	cytosol	12.16	37.17
PGSC0003DMT400008126	Potato	cytosol	12.84	35.05
Zm00001d023982_P001	Maize	cytosol	16.44	24.68
PGSC0003DMT400026308	Potato	cytosol, endoplasmic reticulum, nucleus	9.76	24.26
Zm00001d015278_P001	Maize	mitochondrion	13.36	23.21
PGSC0003DMT400049649	Potato	cytosol	14.21	17.47
PGSC0003DMT400064425	Potato	cytosol	13.36	16.56
PGSC0003DMT400012918	Potato	cytosol	12.67	15.91
PGSC0003DMT400002955	Potato	cytosol	10.27	14.78
PGSC0003DMT400028571	Potato	mitochondrion	10.62	13.51
PGSC0003DMT400045159	Potato	cytosol	9.42	13.35
PGSC0003DMT400023046	Potato	mitochondrion	10.62	13.28

Protein Annotations

Gene3D:1.25.40.20	MapMan:22.3.4.1	Gene3D:3.30.40.160	InterPro:ARFGAP/RecO	InterPro:Ankyrin_rpt	InterPro:Ankyrin_rpt-contain_dom
InterPro:Ankyrin_rpt-contain_sf	InterPro:ArfGAP_dom	InterPro:ArfGAP_dom_sf	ncoils:Coil	GO:GO:0003674	GO:GO:0005096
GO:GO:0005488	GO:GO:0005515	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005737
GO:GO:0007010	GO:GO:0008150	GO:GO:0009987	GO:GO:0016043	GO:GO:0030139	GO:GO:0030234
GO:GO:0043547	GO:GO:0046872	InterPro:IPR001164	InterPro:IPR001849	InterPro:IPR002110	InterPro:IPR020683
InterPro:IPR036770	InterPro:IPR038508	UniProt:M1B466	PFAM:PF00169	PFAM:PF01412	PFAM:PF13637
EnsemblPlantsGene:PGSC0003DMG400014177	PGSC:PGSC0003DMG400014177	EnsemblPlants:PGSC0003DMT400036762	InterPro:PH_domain	PRINTS:PR00405	PFscan:PS50003
PFscan:PS50088	PFscan:PS50115	PFscan:PS50297	PANTHER:PTHR23180	PANTHER:PTHR23180:SF374	SMART:SM00105
SMART:SM00233	SMART:SM00248	SUPFAM:SSF48403	SUPFAM:SSF50729	SUPFAM:SSF57863	UniParc:UPI0002967620
SEG:seg	:	:	:	:	:

Description

ADP-ribosylation factor GTPase-activating protein AGD1 [Source:PGSC_GENE;Acc:PGSC0003DMG400014177]

Coordinates

chr3:+:57822920..57831467

Molecular Weight (calculated)

65329.6 Da

IEP (calculated)

8.417

GRAVY (calculated)

-0.432

Length

584 amino acids

Sequence
(BLAST)

001: MEPYISQVLA YSQKARESSM YEQAALNERM QEYKRKIDQE RRCSFNGSTN GDVTQPFSRS SHKLIEAVMQ SASEGKVQTI KQGYLSKRSS NIRGDWKRRF
101: FVLDSRGMLY YYRKQLSRPS FQGSASPLLS NRCSSPEPGS GLLSRWLSSH YHGGVHEEKA VARHTVNLLT STIKADADQS DLRFCFRIIS PTKNYTLQAE
201: SAAEQMDWIE KITGVITSLL TSQTPERHFS GSPISESSSI GSPIDHDQRA MEEYTSGRDL TGRSFIRPSK SSVHILSTKR EKPVEALKRI PGNDKCADCG
301: APGPEWASLN LGLLICIECS GVHRNFGVHI SKVRSLKLDV KVWGPSIITL FEALGNVFVN SVWEELLHAR KTFQADEIPM RFFESEKHKE FFGKPSYADH
401: ISVKEKFIHA KYAEKRFIHK VKDTTHLLSV AEQLWEGVRA NDKKAVYRLI VVYQADVNAV HGEEASPGSD SSSSFNPQSV SEEHCIDEFL DGCSLLHLAC
501: QTADIGMVEL LLQHGANINA CDSRGQTPLH HSVMRGRTAT SKLLLARGAN PRIADLEGKT PCHLVSELAL NDVEILSLLK VANR

Best Arabidopsis Sequence Match ( AT5G13300.1 )
(BLAST)

001: MHFTKLDDSP MFRKQLQSME ESAEILRERS LKFYKGCRKY TEGLGEAYDG DIAFASALET FGGGHNDPIS VAFGGPVMTK FTIALREIGT YKEVLRSQVE
101: HILNDRLLQF ANMDLHEVKE ARKRFDKASL TYDQAREKFL SLRKGTKSDV AAALEQELHT SRSMFEQARF NLVTALSNVE AKKRFEFLEA VSGTMDAHLR
201: YFKQGYELLH QMEPYINQVL TYAQQSRERS NYEQAALNEK MQEYKRQVDR ESRWGSNGSN GSPNGDGIQA IGRSSHKMID AVMQSAARGK VQTIRQGYLS
301: KRSSNLRGDW KRRFFVLDSR GMLYYYRKQC SKPSGSGSQL SGQRNSSELG SGLLSRWLSS NNHGHGGVHD EKSVARHTVN LLTSTIKVDA DQSDLRFCFR
401: IISPTKNYTL QAESALDQMD WIEKITGVIA SLLSSQVPEQ RLPGSPMGSG HHRSASESSS YESSEYDHPT TEEFVCERSF LGYNERPSRS FQPQRSIRKG
501: EKPIDALRKV CGNDKCADCG APEPDWASLN LGVLVCIECS GVHRNLGVHI SKVRSLTLDV KVWEPSVISL FQALGNTFAN TVWEELLHSR SAIHFDPGLT
601: VSDKSRVMVT GKPSYADMIS IKEKYIQAKY AEKLFVRRSR DSDFPQSAAQ QMWDAVSGND KKAVYRLIVN GDADVNYVYD QTSSSSLTLS RVILVPERPK
701: REDVLLRLRN ELLDRTGSSS NISPEGSGGS SLLHCACEKA DLGMVELLLQ YGANVNASDS SGQTPLHCCL LRGKVTIARL LLTRGADPEA MNREGKTALD
801: IAAESNFTDP EVLALLSDTN GYNHRQC

Arabidopsis Description

AGD3ADP-ribosylation factor GTPase-activating protein AGD3 [Source:UniProtKB/Swiss-Prot;Acc:Q5W7F2]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.