Factsheet for PGSC0003DMT400013119

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 3
plastid 3
cytosol 2
golgi 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, golgi, nucleus, plastid
BaCelLo:	nucleus
EpiLoc:	nucleus
iPSORT:	plastid
MultiLoc:	cytosol
Plant-mPloc:	golgi, nucleus
PProwler:	plastid
WoLF PSORT:	plastid
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
PGSC0003DMT400076862	Potato	cytosol	39.42	63.57
PGSC0003DMT400008126	Potato	cytosol	53.37	51.87
PGSC0003DMT400068809	Potato	plastid	38.94	37.5
Solyc04g008660.2.1	Tomato	cytosol	75.48	20.1
PGSC0003DMT400026308	Potato	cytosol, endoplasmic reticulum, nucleus	22.12	19.57
PGSC0003DMT400036762	Potato	cytosol	38.94	13.87
Bra019896.1-P	Field mustard	cytosol	46.15	12.47
KRH24228	Soybean	cytosol	46.15	12.37
CDX97917	Canola	cytosol	45.67	12.35
AT1G10870.2	Thale cress	cytosol	46.15	12.31
GSMUA_Achr1P01960_001	Banana	cytosol	45.67	12.13
KRH29237	Soybean	cytosol	45.19	12.11
AT1G60860.1	Thale cress	cytosol	44.71	11.98
CDY19326	Canola	cytosol	44.23	11.96
PGSC0003DMT400037441	Potato	cytosol	18.75	11.4
CDY40502	Canola	cytosol	41.35	11.27
Os02t0632500-01	Rice	cytosol, plasma membrane	40.87	11.18
VIT_01s0010g01480.t01	Wine grape	endoplasmic reticulum, extracellular	37.5	10.89
TraesCS6D01G213800.1	Wheat	cytosol	39.9	10.88
PGSC0003DMT400064425	Potato	cytosol	24.52	10.83
TraesCS6B01G259800.1	Wheat	cytosol	39.9	10.82
PGSC0003DMT400037443	Potato	cytosol	10.58	10.78
TraesCS6A01G221400.1	Wheat	cytosol	39.42	10.75
HORVU6Hr1G059210.10	Barley	cytosol, plastid	36.06	10.59
PGSC0003DMT400012918	Potato	cytosol	23.56	10.54
PGSC0003DMT400049649	Potato	cytosol	24.04	10.53
Bra027124.1-P	Field mustard	cytosol	37.5	10.25
CDY54764	Canola	cytosol	37.5	10.24
OQU85359	Sorghum	cytosol, mitochondrion, plastid	39.42	9.77
PGSC0003DMT400005756	Potato	cytosol	37.98	9.67
Zm00001d051187_P009	Maize	plastid	31.73	9.36
PGSC0003DMT400002955	Potato	cytosol	17.79	9.11
PGSC0003DMT400045159	Potato	cytosol	16.35	8.25
PGSC0003DMT400028571	Potato	mitochondrion	17.31	7.84
PGSC0003DMT400023046	Potato	mitochondrion	16.83	7.49
Zm00001d051188_P001	Maize	cytosol	3.85	6.06

Protein Annotations

Gene3D:3.30.40.160	MapMan:35.1	InterPro:ARFGAP/RecO	InterPro:ArfGAP_dom	InterPro:ArfGAP_dom_sf	GO:GO:0003674
GO:GO:0005096	GO:GO:0005488	GO:GO:0008150	GO:GO:0030234	GO:GO:0043547	GO:GO:0046872
InterPro:IPR001164	InterPro:IPR038508	UniProt:M1A2C2	PFAM:PF01412	EnsemblPlantsGene:PGSC0003DMG400005125	PGSC:PGSC0003DMG400005125
EnsemblPlants:PGSC0003DMT400013119	PRINTS:PR00405	PFscan:PS50115	PANTHER:PTHR23180	PANTHER:PTHR23180:SF244	SMART:SM00105
SUPFAM:SSF57863	UniParc:UPI000294C661	:	:	:	:

Description

Arf GTPase-activating domain-containing protein [Source:PGSC_GENE;Acc:PGSC0003DMG400005125]

Coordinates

chr1:-:83228725..83232252

Molecular Weight (calculated)

22678.3 Da

IEP (calculated)

7.768

GRAVY (calculated)

-0.015

Length

208 amino acids

Sequence
(BLAST)

001: MSNNTYAGSL NVQGSVNDEN ALASVRVNQP DSVSKILREV PGNDKCYTCG ASEPDWASLN LGILICIECS GIHWNLGVHI SKVRSILLDV RVWEPTILDL
101: FRTLGNSYCN SVWEELLQLP SDGLTNVDAI QSASKPSPKD AFHEKEKYIL AKATLLSVAD KATLEKCYLN SKVTALSATL GKVWLKVKKC GLLSKATLFH
201: SLGHTFLG

Best Arabidopsis Sequence Match ( AT1G10870.1 )
(BLAST)

001: MATFINLEDS PMFQKQVCSL EGTADELKDR CQKLYKGVKK FMGTLGEASK GESAFAACLE EFGGGPDDPI SLSIGGPVIS KFINALRELA SYKEFLCSQV
101: EHVLLERLMN FISVDLQEAK ESRHRFDKAA HSYDQSREKF VSLKKNTRGE IVAELEEDLE NSKSTFEKSR FNLVNSLMTI EAKKKYEFLE SISAIMDAHL
201: RYFKLGYDLL NQLEPFIHQI LTYAQQSKEQ SKIEQDRLAR RIQEFRTQSE LDSQQLVANA ESSGANGNRV GGNIPYKNTE TSLTADKEVI KQGYLLKRSS
301: SLRTDWKRKF FVLDSHGSMY YYRTNGNKSM GSHHHYSGSS DHNTGVFGRF RARHNRSGSL TEGSLGYNTI DLRTSLIKLD AEDMDLRLCF RIISPQKTYT
401: LQAENGADRM DWVNKITKAI GTLLNSHFLQ QSPVRYLDKD NSSSAPANAV VSGDQIRHND SRQNIGDDVS TILRGLPGNN ACAECNAPEP DWASLNLGVL
501: LCIQCSGVHR NLGVHISKVR SLSLDVKVWE PTILDLFRNL GNVYCNSLWE GLLHLDDDCE DGSALSHASV SKPCPEDSFS VKEKYILGKY LEKALVIKDE
601: SEANLSAASR IWEAVQSRNI REIYRLIVTT GDVNIINTKF DDITDIDAYH HIDAAEKAVK KRHDPTVCQR IKESNEPRSC LQGCSLLHVA CHIGDSVLLE
701: LLLQFGADLN IRDYHGRTPL HHCISSGNHK FAKILLRRGA RPSIEDDGGL SVLERAMEMG AITDEELFLL LAECA

Arabidopsis Description

AGD4ARF-GAP domain 4 [Source:TAIR;Acc:AT1G10870]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.