CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 2
cytosol 2
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, nucleus
BaCelLo:	nucleus
MultiLoc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY54764	Canola	cytosol	95.02	95.14
AT1G60860.1	Thale cress	cytosol	88.07	86.6
CDY19326	Canola	cytosol	79.95	79.32
CDX97917	Canola	cytosol	79.69	79.06
KRH29237	Soybean	cytosol	63.83	62.76
KRH24228	Soybean	cytosol	63.3	62.24
Solyc04g008660.2.1	Tomato	cytosol	59.24	57.87
GSMUA_Achr1P01960_001	Banana	cytosol	57.27	55.81
TraesCS6A01G221400.1	Wheat	cytosol	54.78	54.78
TraesCS6D01G213800.1	Wheat	cytosol	54.65	54.65
TraesCS6B01G259800.1	Wheat	cytosol	54.78	54.5
Os02t0632500-01	Rice	cytosol, plasma membrane	54.0	54.21
Zm00001d051188_P001	Maize	cytosol	9.31	53.79
OQU85359	Sorghum	cytosol, mitochondrion, plastid	55.44	50.42
HORVU6Hr1G059210.10	Barley	cytosol, plastid	46.0	49.58
PGSC0003DMT400076862	Potato	cytosol	8.26	48.84
VIT_01s0010g01480.t01	Wine grape	endoplasmic reticulum, extracellular	45.09	48.04
Zm00001d051187_P009	Maize	plastid	42.99	46.52
CDX70496	Canola	cytosol	33.42	46.11
PGSC0003DMT400008126	Potato	cytosol	12.58	44.86
CDY09784	Canola	cytosol	44.95	42.98
CDX69650	Canola	cytosol	45.09	41.65
CDX78515	Canola	cytosol	45.22	41.52
PGSC0003DMT400013119	Potato	cytosol	11.27	41.35
CDY00242	Canola	cytosol	41.02	39.77
CDX86943	Canola	cytosol	35.52	38.06
CDY71222	Canola	cytosol	4.72	37.5
CDY30689	Canola	cytosol	41.94	37.12
CDX86944	Canola	cytosol	6.29	36.64
CDY53619	Canola	cytosol	13.24	29.97
CDX95838	Canola	cytosol	7.47	22.44
CDX92147	Canola	cytosol	7.08	21.26
CDY58500	Canola	cytosol	7.6	14.46
CDX77687	Canola	cytosol	7.6	14.43
CDY52243	Canola	cytosol	8.78	14.23
CDY43044	Canola	cytosol	8.78	14.02
CDY63834	Canola	cytosol	8.65	13.92
CDY43831	Canola	cytosol	8.78	13.9
CDY28774	Canola	endoplasmic reticulum, plasma membrane	8.78	13.59
CDX78809	Canola	cytosol	6.95	13.55
CDY44506	Canola	cytosol	6.95	13.38
CDY01499	Canola	cytosol	6.95	13.02
CDX90439	Canola	cytosol	6.95	12.93
CDY64205	Canola	endoplasmic reticulum	8.26	12.78
CDY59045	Canola	cytosol	6.42	12.47
CDY69342	Canola	mitochondrion	6.95	12.1
CDY18435	Canola	cytosol	6.68	12.09
CDY07784	Canola	mitochondrion	6.68	11.78
CDX76193	Canola	cytosol	6.95	11.75
CDY30849	Canola	cytosol	6.68	11.38
CDX74953	Canola	cytosol	6.68	11.28
CDX79739	Canola	mitochondrion	6.55	11.04
CDX73533	Canola	cytosol	6.29	10.76
CDX78196	Canola	cytosol	6.16	10.56
CDY08879	Canola	cytosol	2.88	6.98
CDY26647	Canola	plastid	1.44	6.08
CDY23645	Canola	cytosol	1.05	4.94
CDY16083	Canola	cytosol	1.44	4.66

Protein Annotations

Gene3D:1.20.1270.60	Gene3D:1.25.40.20	Gene3D:2.30.29.30	MapMan:22.3.4.1	Gene3D:3.30.40.160	GO:A0A078HRQ4
UniProt:A0A078HRQ4	InterPro:AGD1/2/3/4_BAR_plant	InterPro:AH/BAR_dom_sf	InterPro:ARFGAP/RecO	InterPro:Ankyrin_rpt	InterPro:Ankyrin_rpt-contain_dom
InterPro:Ankyrin_rpt-contain_sf	InterPro:ArfGAP_dom	InterPro:ArfGAP_dom_sf	InterPro:BAR_dom	EnsemblPlants:CDY40502	ProteinID:CDY40502
ProteinID:CDY40502.1	ncoils:Coil	GO:GO:0003674	GO:GO:0005096	GO:GO:0005488	GO:GO:0005515
GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005737	GO:GO:0008150	GO:GO:0030234
GO:GO:0043547	GO:GO:0046872	EnsemblPlantsGene:GSBRNA2T00069787001	InterPro:IPR001164	InterPro:IPR001849	InterPro:IPR002110
InterPro:IPR004148	InterPro:IPR011993	InterPro:IPR020683	InterPro:IPR027267	InterPro:IPR036770	InterPro:IPR038508
PFAM:PF00169	PFAM:PF01412	PFAM:PF12796	PFAM:PF16746	InterPro:PH-like_dom_sf	InterPro:PH_domain
PRINTS:PR00405	PFscan:PS50003	PFscan:PS50088	PFscan:PS50115	PFscan:PS50297	PANTHER:PTHR23180
PANTHER:PTHR23180:SF244	SMART:SM00105	SMART:SM00233	SMART:SM00248	SMART:SM00721	SUPFAM:SSF103657
SUPFAM:SSF48403	SUPFAM:SSF50729	SUPFAM:SSF57863	UniParc:UPI0004EDB759	:	:

Description

BnaC09g14600DBnaC09g14600D protein [Source:UniProtKB/TrEMBL;Acc:A0A078HRQ4]

Coordinates

chrLK032472:-:294573..300086

Molecular Weight (calculated)

86379.2 Da

IEP (calculated)

6.608

GRAVY (calculated)

-0.460

Length

763 amino acids

Sequence
(BLAST)

001: MAAFINLEDS PMFQKQVFSL EGTTDELKDR CQKLYKGVKK FMGVLGEAST GVSAFADSLE EFGAGHDDPV SVSIGGCPVI SKFVNTLREL SSYKEFLRSQ
101: VEHVLLERLT NFMTVDLQEA KESRRRFDKA VHSYDQAREK FVSLKKNTRG EIVAELEEDL ENSKSAFEKS RFNLVNSLMT IEAKKKYQFL ESISAIMDSH
201: LRYFKLGYDL LSQLEPYIHH VLTDAQQSKE QSKIEQDRFE KRIQEFRTQS ELDSQQVEPS NVDGNHVYRT IPYKNVEATS ISTADKEVIK QGYLLKRSAS
301: LRADWKRRFF VLDNHGSLYY YRNTGNKSAG SQHYYSGLGE HRSGVFRRFR SRHIRSASQG SLDCNLIDLR TSLIKLDAED TDLRLCFRII SPQMTYTLQA
401: ENGADRMDWV NKITAAIATR LNSHFLQQSP INYASSGPAG DELSLDQKQD YNQRVNMGDD VFTTLRGIPG NDACAECNAP DPDWASLNLG VLMCIECSGV
501: HRNLGVHISK VFASFSLWEP TILDLFRNLG NAYCNGVWEG LLHFDHDCGK GSTNKLELIT KPSSKDSFAL KEKYIQAKYL EKALVIKDER ETNLTASTRI
601: WEAVQSKNIR EIYRLIVTAD VNVINTKFDD ITSVDAYHHH VDTQDEVKKR HDPNACQRIK DSNDSRNCLQ GCSLLHVACQ SGDPVLLELL LQFGADINMR
701: DYHGRTPLHH CIASGNNAFA KVLLRRGARP SIEDGGGLSV LERAMEMGAI ADEELFLLLA ECH

Best Arabidopsis Sequence Match ( AT1G60860.1 )
(BLAST)

001: MAGFINLEDS PMFQKQVFSL EGTSDELKDR CQKLYKGVKK FMGALGEAST GVSAFADSLE EFGAGHDDPV SVSIGGPVIS KFINTLRELS SYKEFLRSQV
101: EHVLLERLTN FMTVDLQEAK ESRRRFDKAV HSYDQAREKF VSLKKNTRGD IVAELEEDLE NSKSAFEKSR FNLVNSLMTI EAKKKYEFLE SISAIMDSHF
201: KYFKLGYDLL SQLEPYIHQV LTYAQQSKEQ SKIEQDRFAQ RIQEFRTQSE LDSQQASAKA DPSDVGGNHV YRAIPRKNVE ANSVSTADKE VTKQGYLLKR
301: SASLRADWKR RFFVLDNHGS LYYYRNTGNK SAKSQHYYSG LGEHSSGVFG RFRTRHNRSA SQGSLDCNMI DLRTSLIKLD AEDTDLRLCF RIISPQKTYT
401: LQAENGADRM DWVNKITAAI TIRLNSHFLQ QSPARYLDKK NTSSGPATEN LTLNQKEDYN QRLNVGDDVL TILREIPGNN TCAECNAPDP DWASLNLGVL
501: MCIECSGVHR NLGVHISKVR SLTLDVKVWE PTILDLFRNL GNGYCNSVWE ELLHHLDDDS EKGSTDTLAS VSKPSSEDWF TLKEKYINGK YLEKALVVKD
601: EREANSTASS RIWEAVQSRN IRDIYRLIVK ADANIINTKF DDITDLDVYH HHHVDAPDEV KKRHDPNACQ RIKNSNEARN CLQGCSLLHV ACQSGDPILL
701: ELLLQFGADI NMRDYHGRTP LHHCIASGNN AFAKVLLRRG ARPSIEDGGG LSVLERAMEM GAITDEELFL LLAECQ

Arabidopsis Description

AGD2ADP-ribosylation factor GTPase-activating protein AGD2 [Source:UniProtKB/Swiss-Prot;Acc:Q9C6C3]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.