Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- nucleus 2
- mitochondrion 3
- cytosol 2
| Predictors | GFP | MS/MS | Papers |
|---|---|---|---|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDX76193 | Canola | cytosol | 97.1 | 96.45 |
| CDX78196 | Canola | cytosol | 85.94 | 86.52 |
| CDX73533 | Canola | cytosol | 85.04 | 85.43 |
| AT3G53710.2 | Thale cress | cytosol | 85.94 | 83.88 |
| CDY07784 | Canola | mitochondrion | 72.77 | 75.29 |
| CDX79739 | Canola | mitochondrion | 75.22 | 74.39 |
| CDY69342 | Canola | mitochondrion | 70.76 | 72.37 |
| CDX74953 | Canola | cytosol | 72.54 | 71.9 |
| CDY23645 | Canola | cytosol | 25.0 | 69.14 |
| CDY16083 | Canola | cytosol | 34.38 | 65.25 |
| CDY18435 | Canola | cytosol | 58.93 | 62.56 |
| CDY26647 | Canola | plastid | 24.33 | 60.22 |
| CDY71222 | Canola | cytosol | 8.26 | 38.54 |
| CDY01499 | Canola | cytosol | 20.54 | 22.6 |
| CDX78809 | Canola | cytosol | 19.64 | 22.51 |
| CDX95838 | Canola | cytosol | 12.72 | 22.44 |
| CDX90439 | Canola | cytosol | 20.54 | 22.44 |
| CDY44506 | Canola | cytosol | 19.64 | 22.22 |
| CDX92147 | Canola | cytosol | 12.5 | 22.05 |
| CDX77687 | Canola | cytosol | 19.64 | 21.89 |
| CDY58500 | Canola | cytosol | 18.97 | 21.2 |
| CDY59045 | Canola | cytosol | 17.41 | 19.85 |
| CDY43831 | Canola | cytosol | 18.97 | 17.63 |
| CDY63834 | Canola | cytosol | 18.53 | 17.51 |
| CDY43044 | Canola | cytosol | 18.3 | 17.15 |
| CDY52243 | Canola | cytosol | 17.63 | 16.77 |
| CDY64205 | Canola | endoplasmic reticulum | 18.08 | 16.43 |
| CDY28774 | Canola | endoplasmic reticulum, plasma membrane | 17.19 | 15.62 |
| CDY53619 | Canola | cytosol | 9.38 | 12.46 |
| CDY08879 | Canola | cytosol | 7.81 | 11.11 |
| CDX86943 | Canola | cytosol | 13.62 | 8.57 |
| CDY09784 | Canola | cytosol | 14.96 | 8.4 |
| CDX78515 | Canola | cytosol | 15.18 | 8.18 |
| CDX69650 | Canola | cytosol | 14.96 | 8.11 |
| CDY00242 | Canola | cytosol | 13.62 | 7.75 |
| CDX97917 | Canola | cytosol | 13.17 | 7.67 |
| CDY19326 | Canola | cytosol | 12.95 | 7.54 |
| CDY30689 | Canola | cytosol | 14.06 | 7.31 |
| CDY54764 | Canola | cytosol | 11.38 | 6.69 |
| CDY40502 | Canola | cytosol | 11.38 | 6.68 |
| CDX70496 | Canola | cytosol | 5.8 | 4.7 |
| CDX86944 | Canola | cytosol | 0.45 | 1.53 |
Protein Annotations
| MapMan:22.3.4.2 | Gene3D:3.30.40.160 | GO:A0A078H082 | UniProt:A0A078H082 | InterPro:ARFGAP/RecO | InterPro:ArfGAP_dom |
| InterPro:ArfGAP_dom_sf | EnsemblPlants:CDY30849 | ProteinID:CDY30849 | ProteinID:CDY30849.1 | GO:GO:0003674 | GO:GO:0005096 |
| GO:GO:0005488 | GO:GO:0008150 | GO:GO:0030234 | GO:GO:0043547 | GO:GO:0046872 | EnsemblPlantsGene:GSBRNA2T00046321001 |
| InterPro:IPR001164 | InterPro:IPR038508 | PFAM:PF01412 | PRINTS:PR00405 | PFscan:PS50115 | PANTHER:PTHR23180 |
| PANTHER:PTHR23180:SF35 | SMART:SM00105 | SUPFAM:SSF57863 | UniParc:UPI0004EEBC07 | SEG:seg | : |
Description
BnaC04g27040DBnaC04g27040D protein [Source:UniProtKB/TrEMBL;Acc:A0A078H082]
Coordinates
chrLK032262:+:128181..130184
Molecular Weight (calculated)
47676.4 Da
IEP (calculated)
7.653
GRAVY (calculated)
-0.854
Length
448 amino acids
Sequence
(BLAST)
(BLAST)
001: MAAARQLRAL QSHPENKVCV DCAQKNPQWA SVSYGIFMCL ECSGKHRGLG VHISFVRSVT MDSWSEIQIK KMEAGGNERL NSFLSQYGIA KETDIISKYN
101: SNAASVYRDR IQALAEGKAW SDPPVVKEGV HKKPPLAAQG GGGGGGGGGW DSWGNEDSYR SDMRRNQSEN DFRGGGGGGG ARAKSKSSED VYTRSQLEAS
201: AAGKESFFAR RMAENESKPE GLPPSQGGKY VGFGSSSGPA PRNNQQDDVF SVVSQGFGRL SMVAASAASV VQTGTKEFTS KVKEGGYDHK VTETVNVVAT
301: KTTEIGHRTW GIMKGVMAIA TQKVGEYTKE GTTNWNQHNE SEGNGYSQNY GSGNKPANPS SGGGGSQSSS TGHYNNSQKS NSWDDWGENE TPKKNEAVAP
401: KGSSASNDDG GWTGWDDGFD GHYQSADDKK SVGHNGKPDT AWTGGGFL
101: SNAASVYRDR IQALAEGKAW SDPPVVKEGV HKKPPLAAQG GGGGGGGGGW DSWGNEDSYR SDMRRNQSEN DFRGGGGGGG ARAKSKSSED VYTRSQLEAS
201: AAGKESFFAR RMAENESKPE GLPPSQGGKY VGFGSSSGPA PRNNQQDDVF SVVSQGFGRL SMVAASAASV VQTGTKEFTS KVKEGGYDHK VTETVNVVAT
301: KTTEIGHRTW GIMKGVMAIA TQKVGEYTKE GTTNWNQHNE SEGNGYSQNY GSGNKPANPS SGGGGSQSSS TGHYNNSQKS NSWDDWGENE TPKKNEAVAP
401: KGSSASNDDG GWTGWDDGFD GHYQSADDKK SVGHNGKPDT AWTGGGFL
001: MAATRQLRTL QSQPENKVCV DCAQKNPQWA SVSYGIFMCL ECSGKHRGLG VHISFVRSVT MDSWSAIQIK KMEAGGNERL NKFFAQYGIA KETDIISKYN
101: SNAASVYRDR IQALAEGRPW NDPPVVKEAN KKPPLAQGGY GNNNNNNNGG WDSWDNDDSY KSDMRRNQSA NDFRASGNRE GAHVKSKSSE DIYTRSQLEA
201: SAAGKESFFA RRMAENESKP EGLPPSQGGK YVGFGSSSAP PPRNNQQDDV FSVVSQGFGR LSLVAASAAQ SAASVVQTGT KEFTSKVKEG GYDHKVSETV
301: NVVANKTTEI GHRTWGIMKG VMAMATQKVE EFTKEGSTSW NQQSENEGNG YYQNFGNGNK AANSSVGGGR PQSSSTSGHY NNSQNSNSWD SWGENENKKT
401: EAVAPKGSSA SNDDDGWTGW DDHDAKDDGF DGHYQSAGDK KSAGHNGKSD TAWTGGGFL
101: SNAASVYRDR IQALAEGRPW NDPPVVKEAN KKPPLAQGGY GNNNNNNNGG WDSWDNDDSY KSDMRRNQSA NDFRASGNRE GAHVKSKSSE DIYTRSQLEA
201: SAAGKESFFA RRMAENESKP EGLPPSQGGK YVGFGSSSAP PPRNNQQDDV FSVVSQGFGR LSLVAASAAQ SAASVVQTGT KEFTSKVKEG GYDHKVSETV
301: NVVANKTTEI GHRTWGIMKG VMAMATQKVE EFTKEGSTSW NQQSENEGNG YYQNFGNGNK AANSSVGGGR PQSSSTSGHY NNSQNSNSWD SWGENENKKT
401: EAVAPKGSSA SNDDDGWTGW DDHDAKDDGF DGHYQSAGDK KSAGHNGKSD TAWTGGGFL
Arabidopsis Description
AGD6Probable ADP-ribosylation factor GTPase-activating protein AGD6 [Source:UniProtKB/Swiss-Prot;Acc:Q9M354]
SUBAcon: [cytosol]
SUBAcon: [cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.