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Canola
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Canola
Subcellular Localization
min:
: max

 
Winner_takes_all: cytosol

Predictor Summary:
  • nucleus 2
  • cytosol 2
  • mitochondrion 1
Predictors GFP MS/MS Papers
Winner Takes All:cytosol
Any Predictor:cytosol, nucleus
BaCelLo:nucleus
MultiLoc:cytosol
PProwler:mitochondrion
WoLF PSORT:nucleus
YLoc:cytosol
PPI

Inferred distinct locusB in Crop

locusBlocations
CDX67529
CDX69650
CDX93914
CDX99702
CDY09784
CDY13364
CDY27661
CDY53717

Inferred from Arabidopsis experimental PPI

Ath locusAlocusBAth locusBPaper
AT5G13300.1 CDX93914 AT3G63300.1 19363154
AT5G13300.1 CDY53717 AT3G63300.1 19363154
AT5G13300.1 CDX69650 AT5G13300.1 15743878
AT5G13300.1 CDY09784 AT5G13300.1 15743878
AT5G13300.1 CDX67529 AT5G42080.1 15923323
AT5G13300.1 CDX99702 AT5G42080.1 15923323
AT5G13300.1 CDY13364 AT5G42080.1 15923323
AT5G13300.1 CDY27661 AT5G42080.1 15923323
Homology

Paralog

locusIdentityHomology Identity

Ortholog

locusHomology SpeciesLocationIdentityHomology Identity
Bra008838.1-P Field mustard cytosol 99.76 99.76
CDY09784 Canola cytosol 96.37 99.75
CDX70496 Canola cytosol 64.04 95.66
CDX78515 Canola cytosol 94.92 94.34
AT5G13300.1 Thale cress cytosol 92.86 92.74
CDY53619 Canola cytosol 33.41 81.9
VIT_01s0150g00030.t01 Wine grape cytosol 78.69 78.12
KRH45201 Soybean cytosol 77.6 77.89
PGSC0003DMT400005756 Potato cytosol 76.51 77.36
KRH01512 Soybean cytosol 76.39 75.21
Zm00001d049872_P001 Maize cytosol 48.31 72.68
GSMUA_Achr11P... Banana cytosol 69.73 70.59
TraesCS5A01G293000.1 Wheat cytosol 69.73 69.31
TraesCS5B01G292200.1 Wheat cytosol 69.61 68.94
TraesCS5D01G300300.2 Wheat cytosol 69.61 68.45
Os09t0510700-01 Rice cytosol 69.25 68.42
GSMUA_Achr4P00060_001 Banana cytosol 69.01 68.1
EER99172 Sorghum cytosol 68.77 67.94
Zm00001d021087_P003 Maize cytosol 68.52 67.62
HORVU5Hr1G077570.15 Barley cytosol 68.52 67.62
OQU80812 Sorghum cytosol 65.74 65.9
TraesCS7A01G263800.2 Wheat cytosol 65.5 65.74
Zm00001d031667_P006 Maize cytosol 64.65 64.88
HORVU7Hr1G055220.21 Barley cytosol 65.25 64.86
Os08t0537600-01 Rice plasma membrane 64.89 64.5
CDY00242 Canola cytosol 61.14 64.17
TraesCS7D01G264700.1 Wheat endoplasmic reticulum 64.89 63.28
TraesCS7B01G161800.1 Wheat endoplasmic reticulum 64.89 63.28
CDX86944 Canola cytosol 9.81 61.83
CDY30689 Canola cytosol 64.29 61.6
CDX86943 Canola cytosol 52.91 61.38
GSMUA_Achr7P22530_001 Banana endoplasmic reticulum 54.96 61.35
Zm00001d009353_P001 Maize cytosol 8.84 60.33
Zm00001d015981_P001 Maize peroxisome 10.17 54.9
Zm00001d015278_P001 Maize mitochondrion 20.58 50.6
Zm00001d004245_P003 Maize cytosol 11.38 48.96
CDY71222 Canola cytosol 5.69 48.96
CDX97917 Canola cytosol 43.22 46.42
CDY19326 Canola cytosol 42.98 46.16
CDY40502 Canola cytosol 41.65 45.09
Zm00001d049871_P001 Maize cytosol 10.41 45.03
CDY54764 Canola cytosol 40.44 43.83
Zm00001d023982_P001 Maize cytosol 15.5 32.9
CDX95838 Canola cytosol 8.11 26.38
CDX92147 Canola cytosol 7.51 24.41
CDY63834 Canola cytosol 10.41 18.14
CDY43044 Canola cytosol 10.17 17.57
CDY43831 Canola cytosol 10.05 17.22
CDY52243 Canola cytosol 9.81 17.2
CDX78809 Canola cytosol 7.75 16.37
CDY58500 Canola cytosol 7.87 16.21
CDX77687 Canola cytosol 7.87 16.17
CDY44506 Canola cytosol 7.75 16.16
CDY64205 Canola endoplasmic reticulum 9.44 15.82
CDX78196 Canola cytosol 8.35 15.51
CDX74953 Canola cytosol 8.47 15.49
CDY28774 Canola endoplasmic reticulum, plasma membrane 9.2 15.42
CDY18435 Canola cytosol 7.87 15.4
CDX76193 Canola cytosol 8.35 15.3
CDY69342 Canola mitochondrion 8.11 15.3
CDX73533 Canola cytosol 8.23 15.25
CDY07784 Canola mitochondrion 7.99 15.24
CDX79739 Canola mitochondrion 8.23 15.01
CDY30849 Canola cytosol 8.11 14.96
CDX90439 Canola cytosol 7.38 14.88
CDY01499 Canola cytosol 7.14 14.5
CDY59045 Canola cytosol 6.78 14.25
CDY23645 Canola cytosol 1.69 8.64
CDY16083 Canola cytosol 2.3 8.05
CDY26647 Canola plastid 1.45 6.63
CDY08879 Canola cytosol 2.06 5.4
Protein Annotations
Gene3D:1.20.1270.60Gene3D:1.25.40.20MapMan:22.3.4.1Gene3D:3.30.40.160GO:A0A078BY05InterPro:AGD1/2/3/4_BAR_plant
InterPro:AH/BAR_dom_sfInterPro:ARFGAP/RecOInterPro:Ankyrin_rptInterPro:Ankyrin_rpt-contain_domInterPro:Ankyrin_rpt-contain_sfInterPro:ArfGAP_dom
InterPro:ArfGAP_dom_sfInterPro:BAR_domEnsemblPlants:CDX69650ProteinID:CDX69650ProteinID:CDX69650.1ncoils:Coil
GO:GO:0003674GO:GO:0005096GO:GO:0005488GO:GO:0005515GO:GO:0005575GO:GO:0005622
GO:GO:0005623GO:GO:0005737GO:GO:0008150GO:GO:0030234EnsemblPlantsGene:GSBRNA2T00135673001InterPro:IPR001164
InterPro:IPR001849InterPro:IPR002110InterPro:IPR004148InterPro:IPR020683InterPro:IPR027267InterPro:IPR036770
InterPro:IPR038508PFAM:PF00169PFAM:PF01412PFAM:PF12796PFAM:PF16746InterPro:PH_domain
PRINTS:PR00405PFscan:PS50003PFscan:PS50088PFscan:PS50115PFscan:PS50297PANTHER:PTHR23180
PANTHER:PTHR23180:SF374SMART:SM00105SMART:SM00233SMART:SM00248SMART:SM00721SUPFAM:SSF103657
SUPFAM:SSF48403SUPFAM:SSF50729SUPFAM:SSF57863UniParc:UPI0004EE168CSEG:seg:
Description
BnaA10g19990D
Coordinates
chrLK031790:+:1177968..1183165
Molecular Weight (calculated)
92331.0 Da
IEP (calculated)
7.849
GRAVY (calculated)
-0.507
Length
826 amino acids
Sequence
(BLAST)
001: MHFTKLDDSP MFRKQLQSME ESAEILRERS LKFYKGCRKY TEGLGEAYDG DIAFASALET FGGGHNDPIS VAFGGPVMTK FTIALREIGT YKEVLRSQVE
101: HILNDRLLQF ANMDLHEVKE ARKRFDKASL TYDQAREKFL SLRKGTKSDV AAALEQELHT SRSMFEKARF NLVTTLSNVE AKKRFEFLEA VSGTMDAHLR
201: YFKQGYELLH QMEPYINQVL TYAQQSRERS NYEQAALDEK MQEYKRQVDR ESRYGSNSAN GSPNGDGIQA IGRSSHKMID AVMQSAARGK VQTIRQGYLS
301: KRSSNLRGDW KRRFFVLDSR GMLYYYRKQC SKPSGSGSQL SGQRNSSELG SGLLSRWLSS NNHGGGVHDE KSVARHTVNL LTSTIKVDAD QSDLRFCFRI
401: ISPSKNYTLQ AESALDQMDW IEKITGVIAS LLSSQVPGSP MESGHHRSAS ESSSYESSEY DHPTTDEFVC ERSFMGYNER SSRNFQPQRS IRKGEKPIDV
501: LRKVFGNDKC ADCGAPEPDW ASLNLGVLVC IECSGVHRNL GVHISKVRSL TLDVKVWEPS VITLFQALGN NFANTVWEEL LHSRSAFHVD PGLTGSDKSR
601: VLVTGKPSYA DMISVKEKYI QAKYAEKLFV RRSRDCDFPQ SVAQQMWDAV SANDKKSVYR LIVNGEADVN SVYDQPSSSS SLTLSRVMLI PERPPTREDV
701: LLKLRNELLD RTSSGFSSSI PPEETGGCSL LHCACEKADI GMVELLLQYG ANVNATDSSG QTPLHYCILR GKAVVARLLL TRGADTEAVN GEGKTALDIA
801: AESKFTDAEV LSLLSEAANG YNHRQC
Best Arabidopsis Sequence Match ( AT5G13300.1 )
(BLAST)
001: MHFTKLDDSP MFRKQLQSME ESAEILRERS LKFYKGCRKY TEGLGEAYDG DIAFASALET FGGGHNDPIS VAFGGPVMTK FTIALREIGT YKEVLRSQVE
101: HILNDRLLQF ANMDLHEVKE ARKRFDKASL TYDQAREKFL SLRKGTKSDV AAALEQELHT SRSMFEQARF NLVTALSNVE AKKRFEFLEA VSGTMDAHLR
201: YFKQGYELLH QMEPYINQVL TYAQQSRERS NYEQAALNEK MQEYKRQVDR ESRWGSNGSN GSPNGDGIQA IGRSSHKMID AVMQSAARGK VQTIRQGYLS
301: KRSSNLRGDW KRRFFVLDSR GMLYYYRKQC SKPSGSGSQL SGQRNSSELG SGLLSRWLSS NNHGHGGVHD EKSVARHTVN LLTSTIKVDA DQSDLRFCFR
401: IISPTKNYTL QAESALDQMD WIEKITGVIA SLLSSQVPEQ RLPGSPMGSG HHRSASESSS YESSEYDHPT TEEFVCERSF LGYNERPSRS FQPQRSIRKG
501: EKPIDALRKV CGNDKCADCG APEPDWASLN LGVLVCIECS GVHRNLGVHI SKVRSLTLDV KVWEPSVISL FQALGNTFAN TVWEELLHSR SAIHFDPGLT
601: VSDKSRVMVT GKPSYADMIS IKEKYIQAKY AEKLFVRRSR DSDFPQSAAQ QMWDAVSGND KKAVYRLIVN GDADVNYVYD QTSSSSLTLS RVILVPERPK
701: REDVLLRLRN ELLDRTGSSS NISPEGSGGS SLLHCACEKA DLGMVELLLQ YGANVNASDS SGQTPLHCCL LRGKVTIARL LLTRGADPEA MNREGKTALD
801: IAAESNFTDP EVLALLSDTN GYNHRQC
Arabidopsis Description
AGD3ADP-ribosylation factor GTPase-activating protein AGD3 [Source:UniProtKB/Swiss-Prot;Acc:Q5W7F2]
SUBAcon: [cytosol]
Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.