Factsheet for Bra008838.1-P

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 2
cytosol 2
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, mitochondrion, nucleus
BaCelLo:	nucleus
MultiLoc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	cytosol

PPI

Inferred distinct locusB in Crop

locusB	locations
Bra008838.1-P
Bra025448.1-P
Bra028525.1-P
Bra040444.1-P

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT5G13300.1	Bra040444.1-P	AT3G63300.1	19363154
AT5G13300.1	Bra008838.1-P	AT5G13300.1	15743878
AT5G13300.1	Bra025448.1-P	AT5G42080.1	15923323
AT5G13300.1	Bra028525.1-P	AT5G42080.1	15923323

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDX69650	Canola	cytosol	99.76	99.76
CDY09784	Canola	cytosol	96.13	99.5
Bra006193.1-P	Field mustard	cytosol	92.37	93.85
AT5G13300.1	Thale cress	cytosol	92.61	92.5
VIT_01s0150g00030.t01	Wine grape	cytosol	78.45	77.88
KRH45201	Soybean	cytosol	77.36	77.64
PGSC0003DMT400005756	Potato	cytosol	76.27	77.11
KRH01512	Soybean	cytosol	76.15	74.97
Zm00001d049872_P001	Maize	cytosol	48.06	72.31
GSMUA_Achr11P...	Banana	cytosol	69.49	70.34
TraesCS5A01G293000.1	Wheat	cytosol	69.49	69.07
TraesCS5B01G292200.1	Wheat	cytosol	69.37	68.7
TraesCS5D01G300300.2	Wheat	cytosol	69.37	68.21
Os09t0510700-01	Rice	cytosol	69.01	68.18
GSMUA_Achr4P00060_001	Banana	cytosol	68.77	67.86
EER99172	Sorghum	cytosol	68.52	67.7
Zm00001d021087_P003	Maize	cytosol	68.28	67.38
HORVU5Hr1G077570.15	Barley	cytosol	68.28	67.38
OQU80812	Sorghum	cytosol	65.5	65.66
TraesCS7A01G263800.2	Wheat	cytosol	65.25	65.49
Zm00001d031667_P006	Maize	cytosol	64.41	64.64
HORVU7Hr1G055220.21	Barley	cytosol	65.01	64.62
Os08t0537600-01	Rice	plasma membrane	64.65	64.26
TraesCS7B01G161800.1	Wheat	endoplasmic reticulum	64.65	63.05
TraesCS7D01G264700.1	Wheat	endoplasmic reticulum	64.65	63.05
Bra010046.1-P	Field mustard	cytosol	59.56	62.2
Bra029295.1-P	Field mustard	cytosol	64.29	61.6
GSMUA_Achr7P22530_001	Banana	endoplasmic reticulum	54.72	61.08
Zm00001d009353_P001	Maize	cytosol	8.84	60.33
Zm00001d015981_P001	Maize	peroxisome	10.17	54.9
Zm00001d015278_P001	Maize	mitochondrion	20.58	50.6
Zm00001d004245_P003	Maize	cytosol	11.38	48.96
Bra019896.1-P	Field mustard	cytosol	42.98	46.1
Zm00001d049871_P001	Maize	cytosol	10.41	45.03
Bra027124.1-P	Field mustard	cytosol	40.19	43.63
Zm00001d023982_P001	Maize	cytosol	15.38	32.65
Bra021263.1-P	Field mustard	cytosol	7.75	23.36
Bra002995.1-P	Field mustard	cytosol	10.41	18.14
Bra029030.1-P	Field mustard	cytosol	10.17	17.57
Bra022711.1-P	Field mustard	cytosol	9.69	16.95
Bra024999.1-P	Field mustard	cytosol	7.38	16.71
Bra013265.1-P	Field mustard	cytosol	7.75	16.24
Bra039812.1-P	Field mustard	cytosol	8.23	15.08
Bra007020.1-P	Field mustard	cytosol	8.23	14.98
Bra017179.1-P	Field mustard	cytosol	7.99	14.97
Bra005187.1-P	Field mustard	cytosol	7.99	14.97
Bra017330.1-P	Field mustard	cytosol	6.66	13.96
Bra000005.1-P	Field mustard	mitochondrion	7.99	13.84
Bra026910.1-P	Field mustard	plastid	1.45	6.63
Bra012634.1-P	Field mustard	cytosol	7.51	6.06

Protein Annotations

Gene3D:1.20.1270.60	Gene3D:1.25.40.20	MapMan:22.3.4.1	Gene3D:3.30.40.160	InterPro:AGD1/2/3/4_BAR_plant	InterPro:AH/BAR_dom_sf
InterPro:ARFGAP/RecO	InterPro:Ankyrin_rpt	InterPro:Ankyrin_rpt-contain_dom	InterPro:Ankyrin_rpt-contain_sf	InterPro:ArfGAP_dom	InterPro:ArfGAP_dom_sf
InterPro:BAR_dom	EnsemblPlantsGene:Bra008838	EnsemblPlants:Bra008838.1	EnsemblPlants:Bra008838.1-P	ncoils:Coil	GO:GO:0003674
GO:GO:0005096	GO:GO:0005488	GO:GO:0005515	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623
GO:GO:0005737	GO:GO:0005794	GO:GO:0005829	GO:GO:0005886	GO:GO:0006810	GO:GO:0006897
GO:GO:0007275	GO:GO:0008150	GO:GO:0008289	GO:GO:0009653	GO:GO:0009719	GO:GO:0009733
GO:GO:0009965	GO:GO:0010051	GO:GO:0010087	GO:GO:0016020	GO:GO:0030140	GO:GO:0030234
GO:GO:0035091	GO:GO:0043547	GO:GO:0046872	InterPro:IPR001164	InterPro:IPR001849	InterPro:IPR002110
InterPro:IPR004148	InterPro:IPR020683	InterPro:IPR027267	InterPro:IPR036770	InterPro:IPR038508	UniProt:M4CX91
PFAM:PF00169	PFAM:PF01412	PFAM:PF12796	PFAM:PF16746	InterPro:PH_domain	PRINTS:PR00405
PFscan:PS50003	PFscan:PS50088	PFscan:PS50115	PFscan:PS50297	PANTHER:PTHR23180	PANTHER:PTHR23180:SF374
SMART:SM00105	SMART:SM00233	SMART:SM00248	SMART:SM00721	SUPFAM:SSF103657	SUPFAM:SSF48403
SUPFAM:SSF50729	SUPFAM:SSF57863	UniParc:UPI0002543971	SEG:seg	:	:

Description

AT5G13300 (E=0.0) SFC, VAN3, AGD3 | SFC (SCARFACE); ARF GTPase activator/ phosphoinositide binding

Coordinates

chrA10:+:14051937..14056386

Molecular Weight (calculated)

92240.9 Da

IEP (calculated)

7.721

GRAVY (calculated)

-0.502

Length

826 amino acids

Sequence
(BLAST)

001: MHFTKLDDSP MFRKQLQSME ESAEILRERS LKFYKGCRKY TEGLGEAYDG DIAFASALET FGGGHNDPIS VAFGGPVMTK FTIALREIGT YKEVLRSQVE
101: HILNDRLLQF ANMDLHEVKE ARKRFDKASL TYDQAREKFL SLRKGTKSDV AAALEQELHT SRSMFEKARF NLVTTLSNVE AKKRFEFLEA VSGTMDAHLR
201: YFKQGYELLH QMEPYINQVL TYAQQSRERS NYEQAALDEK MQEYKRQVDR ESRYGSNSAN GSPNGDGIQA IGRSSHKMID AVMQSAARGK VQTIRQGYLS
301: KRSSNLRGDW KRRFFVLDSR GMLYYYRKQC SKPSGSGSQL SGQRNSSELG SGLLSRWLSS NNHGGGVHDE KSVARHTVNL LTSTIKVDAD QSDLGFCFRI
401: ISPSKNYTLH AESALDQMDW IEKITGVIAS LLSSQVPGSP MESGHHRSAS ESSSYESSEY DHPTTDEFVC ERSFMGYNER SSRNFQPQRS IRKGEKPIDV
501: LRKVFGNDKC ADCGAPEPDW ASLNLGVLVC IECSGVHRNL GVHISKVRSL TLDVKVWEPS VITLFQALGN NFANTVWEEL LHSRSAFHVD PGLTGSDKSR
601: VLVTGKPSYA DMISVKEKYI QAKYAEKLFV RRSRDCDFPQ SVAQQMWDAV SANDKKSVYR LIVNGEADVN SVYDQPSSSS SLTLSRVMLI PERPPTREDV
701: LLKLRNELLD RTSSGFSSSI PPEETGGCSL LHCACEKADI GMVELLLQYG ANVNATDSSG QTPLHYCILR GKAVVARLLL TRGADTEAVN GEGKTALDIA
801: AESKFTDAEV LSLLSEAANG YNHRQC

Best Arabidopsis Sequence Match ( AT5G13300.1 )
(BLAST)

001: MHFTKLDDSP MFRKQLQSME ESAEILRERS LKFYKGCRKY TEGLGEAYDG DIAFASALET FGGGHNDPIS VAFGGPVMTK FTIALREIGT YKEVLRSQVE
101: HILNDRLLQF ANMDLHEVKE ARKRFDKASL TYDQAREKFL SLRKGTKSDV AAALEQELHT SRSMFEQARF NLVTALSNVE AKKRFEFLEA VSGTMDAHLR
201: YFKQGYELLH QMEPYINQVL TYAQQSRERS NYEQAALNEK MQEYKRQVDR ESRWGSNGSN GSPNGDGIQA IGRSSHKMID AVMQSAARGK VQTIRQGYLS
301: KRSSNLRGDW KRRFFVLDSR GMLYYYRKQC SKPSGSGSQL SGQRNSSELG SGLLSRWLSS NNHGHGGVHD EKSVARHTVN LLTSTIKVDA DQSDLRFCFR
401: IISPTKNYTL QAESALDQMD WIEKITGVIA SLLSSQVPEQ RLPGSPMGSG HHRSASESSS YESSEYDHPT TEEFVCERSF LGYNERPSRS FQPQRSIRKG
501: EKPIDALRKV CGNDKCADCG APEPDWASLN LGVLVCIECS GVHRNLGVHI SKVRSLTLDV KVWEPSVISL FQALGNTFAN TVWEELLHSR SAIHFDPGLT
601: VSDKSRVMVT GKPSYADMIS IKEKYIQAKY AEKLFVRRSR DSDFPQSAAQ QMWDAVSGND KKAVYRLIVN GDADVNYVYD QTSSSSLTLS RVILVPERPK
701: REDVLLRLRN ELLDRTGSSS NISPEGSGGS SLLHCACEKA DLGMVELLLQ YGANVNASDS SGQTPLHCCL LRGKVTIARL LLTRGADPEA MNREGKTALD
801: IAAESNFTDP EVLALLSDTN GYNHRQC

Arabidopsis Description

AGD3ADP-ribosylation factor GTPase-activating protein AGD3 [Source:UniProtKB/Swiss-Prot;Acc:Q5W7F2]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.