Factsheet for Bra012634.1-P

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 2
cytosol 2
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, mitochondrion, nucleus
BaCelLo:	nucleus
MultiLoc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDX90439	Canola	cytosol	39.39	98.29
CDY01499	Canola	cytosol	38.91	97.79
Bra013265.1-P	Field mustard	cytosol	35.09	91.12
AT4G17890.1	Thale cress	cytosol	35.87	88.86
Bra024999.1-P	Field mustard	cytosol	27.18	76.16
VIT_02s0012g01330.t01	Wine grape	cytosol	28.35	71.6
KRH45437	Soybean	endoplasmic reticulum, mitochondrion	27.47	69.73
KRH75607	Soybean	cytosol	27.18	68.98
Solyc08g076920.2.1	Tomato	nucleus	26.88	66.75
PGSC0003DMT400045159	Potato	cytosol	26.59	66.02
Solyc08g005070.2.1	Tomato	cytosol	25.9	65.92
PGSC0003DMT400002955	Potato	cytosol	26.1	65.76
GSMUA_Achr4P28870_001	Banana	cytosol	25.61	64.85
GSMUA_Achr2P18150_001	Banana	cytosol	25.42	64.36
GSMUA_Achr4P21720_001	Banana	cytosol	25.42	64.04
GSMUA_Achr11P...	Banana	cytosol	25.12	63.93
Os10t0574800-01	Rice	plasma membrane	24.83	62.41
EER91883	Sorghum	cytosol	24.44	61.43
TraesCS1A01G193000.1	Wheat	cytosol	24.05	60.74
Zm00001d034885_P002	Maize	cytosol	24.63	60.58
TraesCS1D01G196700.1	Wheat	cytosol	23.95	60.49
Bra017330.1-P	Field mustard	cytosol	23.26	60.41
Zm00001d012827_P002	Maize	cytosol	24.63	59.86
EER90493	Sorghum	cytosol	24.34	59.86
Os03t0854100-01	Rice	cytosol	23.75	58.98
Zm00001d047020_P002	Maize	cytosol	24.34	56.59
TraesCS4A01G323700.1	Wheat	cytosol, nucleus, peroxisome, plastid	22.87	56.52
TraesCS5D01G554100.1	Wheat	cytosol, nucleus, peroxisome, plastid	22.68	56.04
TraesCS1B01G207900.1	Wheat	mitochondrion, plastid	24.05	52.23
Zm00001d030031_P002	Maize	plastid	24.34	51.55
TraesCS5B01G554600.1	Wheat	cytosol, plastid	22.68	50.22
HORVU5Hr1G123590.1	Barley	cytosol	22.87	48.05
HORVU1Hr1G047800.23	Barley	plastid	8.31	25.15
Bra017179.1-P	Field mustard	cytosol	9.29	21.54
Bra005187.1-P	Field mustard	cytosol	8.99	20.86
Bra021263.1-P	Field mustard	cytosol	5.47	20.44
Bra039812.1-P	Field mustard	cytosol	8.99	20.4
Bra000005.1-P	Field mustard	mitochondrion	9.48	20.34
Bra007020.1-P	Field mustard	cytosol	8.99	20.26
Bra029030.1-P	Field mustard	cytosol	7.43	15.9
Bra022711.1-P	Field mustard	cytosol	7.23	15.68
Bra002995.1-P	Field mustard	cytosol	7.23	15.61
Bra026910.1-P	Field mustard	plastid	1.66	9.39
Bra019896.1-P	Field mustard	cytosol	5.87	7.79
Bra008838.1-P	Field mustard	cytosol	6.06	7.51
Bra006193.1-P	Field mustard	cytosol	5.96	7.5
Bra010046.1-P	Field mustard	cytosol	5.57	7.21
Bra029295.1-P	Field mustard	cytosol	5.77	6.84
Bra027124.1-P	Field mustard	cytosol	4.89	6.57

Protein Annotations

MapMan:22.3.4.2	Gene3D:3.30.40.160	Gene3D:3.90.70.10	InterPro:ARFGAP/RecO	InterPro:ArfGAP_dom	InterPro:ArfGAP_dom_sf
EnsemblPlantsGene:Bra012634	EnsemblPlants:Bra012634.1	EnsemblPlants:Bra012634.1-P	GO:GO:0003674	GO:GO:0003824	GO:GO:0005096
GO:GO:0005488	GO:GO:0006464	GO:GO:0006511	GO:GO:0008150	GO:GO:0008152	GO:GO:0009056
GO:GO:0009987	GO:GO:0016579	GO:GO:0016787	GO:GO:0019538	GO:GO:0030234	GO:GO:0036459
GO:GO:0043547	GO:GO:0046872	InterPro:IPR001164	InterPro:IPR028889	InterPro:IPR038508	UniProt:M4D824
PFAM:PF00443	PFAM:PF01412	PRINTS:PR00405	ScanProsite:PS00972	ScanProsite:PS00973	PFscan:PS50115
PFscan:PS50235	PANTHER:PTHR23180	PANTHER:PTHR23180:SF381	InterPro:Papain_like_cys_pep_sf	InterPro:Peptidase_C19_UCH	SMART:SM00105
SUPFAM:SSF54001	SUPFAM:SSF57863	UniParc:UPI0002540A09	InterPro:USP_CS	InterPro:USP_dom	SEG:seg

Description

AT4G17895 (E=3e-177) UBP20 | UBP20 (UBIQUITIN-SPECIFIC PROTEASE 20); ubiquitin thiolesterase/ ubiquitin-specific protease

Coordinates

chrA03:+:23028650..23035256

Molecular Weight (calculated)

113132.0 Da

IEP (calculated)

4.736

GRAVY (calculated)

-0.556

Length

1023 amino acids

Sequence
(BLAST)

0001: MSSSDNLTDK TAVFRKLKSK SDNKVCFDCS AKNPTWASVT YGIFLCIDCS ATHRSLGVHI SFVRSTNLDS WSPEQLRTMM FGGNNRAQVF FKQHGWTDGG
0101: KIEAKYTSRA ADLYRQLLAK EVAKAIAEDA AIALPSSPLA AEGSNGVSSF SVKEELPPKE SFTGKHEATS SPKASNTVVP STFKKPIGAK RTGKSGGLGA
0201: RKLTTKPTGN LYEQKPEEVA PVIPAAASTN NGGSKSSGGS SSYASRFEYN DDFQTGGKSI GGTQVLNHVA PPKSSSFFSD FGMDSSFPKK SSSNSSKAQV
0301: EESDEARKKF TNAKSISSAQ YFGDQNKNAD LESKATLQKF SGSASISSAD FFGHDQDDSN DDITASDLIN RLSFQAQQDI SSIVNIAGET KKKLGTLASG
0401: IFSDLQDRML PIETLDESIG VQSLALSSPN HADEEVSLET LTVPSLDVPV DYDEPFSDIG CLSDNYKRWT PNVSPGYDTD DESTSYQPLL SFIQDPPTMI
0501: DDEPTGVGVG LWNLGNSCFV NSVLQCLTHT LPLIESLCSY EPPEPCNCGN EWFCVRSAFK GHLEAALTTS RSSIAPYSFL NNLNYFSADF RRYQQEDAHE
0601: FLQAFLDKLE RCCLEDPSSD SLSSQDVNLV QRIFGGRLVS QLRCCDCNSV SETFENSLGL SLEIEDVDNL QSALDSFTRV EKLDEPMTCD NCKEKVSKEK
0701: QLLLYKLPQV VTFHLKRFKN NGFFMEKIFN HVKFPLEIDL QPYMVRSQNN EVTAKYRLYA FVEHFGSLAY GHYSSYVRSA PKIWHQFDDK QVTRIDEDRV
0801: LSQDAYILFY AREGIPLFST TFQEVHPLVE ASLQNPSPNS VLDPTSGECS SEISYENAYK SNKLLCENSA GVIQHVKPEE RYVSLSNEFD EDVMLQSTES
0901: CGEDDDNSND SCTEKEVDSR LDIERAATGD DSVPYPMVQD QDSSQRQQDG TFLIQLEKLE ATKNQEEEEE PCKQPLLISH VGESKENEIV HRRGPVKKPS
1001: PRERVLDQGI STTGSPPKKL KKA

Best Arabidopsis Sequence Match ( AT4G17890.1 )
(BLAST)

001: MASSSADNLT DKNIVFRKLK SKSENKVCFD CSAKNPTWAS VTYGIFLCID CSATHRNLGV HISFVRSTNL DSWSPEQLRT MMFGGNNRAQ VFFKQHGWTD
101: GGKIEAKYTS RAADLYRQIL AKEVAKAIAE ETNSGLLSSP VATSQLPEVS NGVSSYSVKE ELPLSKHEAT SATSSPKASN TVVPSTFKKP IGAKRTGKTG
201: GLGARKLTTK PKDNLYEQKP EEVAPVIPAV SSTNNGESKS SAGSSFASRF EYNDDLQSGG QSVGGTQVLN HVAPPKSSSF FSDFGMDSSF PKKSSSNSSK
301: SQVEESDEAR KKFTNAKSIS SAQYFGDQNK NADLESKATL QKFAGSASIS SADFYGHDQD DSNIDITASD LINRLSFQAQ QDLSSLVNIA GETKKKLGTL
401: ASGIFSDIQD RML

Arabidopsis Description

AGD8Probable ADP-ribosylation factor GTPase-activating protein AGD8 [Source:UniProtKB/Swiss-Prot;Acc:Q8H100]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.