Factsheet for GSMUA_Achr4P28870_001

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 3
cytosol 3
golgi 1
mitochondrion 1
plastid 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
GSMUA_Achr4P21720_001	Banana	cytosol	81.93	81.53
GSMUA_Achr11P...	Banana	cytosol	74.01	74.38
GSMUA_Achr2P18150_001	Banana	cytosol	73.27	73.27
Os10t0574800-01	Rice	plasma membrane	68.81	68.3
EER91883	Sorghum	cytosol	68.81	68.3
VIT_02s0012g01330.t01	Wine grape	cytosol	68.32	68.15
KRH45437	Soybean	endoplasmic reticulum, mitochondrion	66.58	66.75
Os03t0854100-01	Rice	cytosol	67.82	66.5
KRH75607	Soybean	cytosol	66.34	66.5
TraesCS1A01G193000.1	Wheat	cytosol	66.34	66.17
TraesCS1D01G196700.1	Wheat	cytosol	65.84	65.68
Zm00001d034885_P002	Maize	cytosol	67.57	65.62
EER90493	Sorghum	cytosol	67.57	65.62
Bra013265.1-P	Field mustard	cytosol	63.61	65.23
TraesCS4A01G323700.1	Wheat	cytosol, nucleus, peroxisome, plastid	66.83	65.22
Solyc08g005070.2.1	Tomato	cytosol	64.85	65.17
CDY44506	Canola	cytosol	63.86	65.15
Zm00001d012827_P002	Maize	cytosol	67.57	64.85
TraesCS5D01G554100.1	Wheat	cytosol, nucleus, peroxisome, plastid	66.34	64.73
CDX78809	Canola	cytosol	62.38	64.45
PGSC0003DMT400002955	Potato	cytosol	64.6	64.29
CDY01499	Canola	cytosol	64.6	64.13
CDX90439	Canola	cytosol	64.85	63.9
Solyc08g076920.2.1	Tomato	nucleus	64.85	63.59
AT4G17890.1	Thale cress	cytosol	64.36	62.95
CDY58500	Canola	cytosol	62.38	62.84
PGSC0003DMT400045159	Potato	cytosol	63.86	62.62
Bra024999.1-P	Field mustard	cytosol	56.44	62.47
AT5G46750.1	Thale cress	cytosol	62.13	62.44
CDX77687	Canola	cytosol	61.88	62.19
Zm00001d047020_P002	Maize	cytosol	67.57	62.05
AT2G35210.1	Thale cress	cytosol	58.66	60.0
CDY59045	Canola	cytosol	58.17	59.8
Bra017330.1-P	Field mustard	cytosol	57.67	59.14
TraesCS5B01G554600.1	Wheat	cytosol, plastid	66.09	57.79
TraesCS1B01G207900.1	Wheat	mitochondrion, plastid	66.09	56.69
Zm00001d030031_P002	Maize	plastid	67.57	56.52
HORVU5Hr1G123590.1	Barley	cytosol	64.85	53.8
HORVU1Hr1G047800.23	Barley	plastid	22.28	26.63
Bra012634.1-P	Field mustard	cytosol	64.85	25.61
GSMUA_Achr10P...	Banana	mitochondrion	20.54	20.91
GSMUA_Achr7P15230_001	Banana	cytosol	21.29	19.68
GSMUA_AchrUn_...	Banana	mitochondrion	20.54	19.58
GSMUA_Achr7P10440_001	Banana	cytosol, plastid	18.56	18.94
GSMUA_Achr5P28610_001	Banana	endoplasmic reticulum, vacuole	20.79	18.46
GSMUA_Achr9P04020_001	Banana	mitochondrion	21.04	17.67
GSMUA_Achr1P08800_001	Banana	cytosol	19.06	16.11
GSMUA_Achr4P23780_001	Banana	cytosol	17.82	15.13
GSMUA_Achr8P07470_001	Banana	cytosol	17.08	14.65
GSMUA_Achr11P...	Banana	cytosol, endoplasmic reticulum, nucleus	16.34	13.87
GSMUA_Achr5P26280_001	Banana	cytosol	15.84	13.56
GSMUA_Achr8P00550_001	Banana	cytosol	12.87	9.24
GSMUA_Achr7P22530_001	Banana	endoplasmic reticulum	13.61	7.43
GSMUA_Achr4P00060_001	Banana	cytosol	15.1	7.29
GSMUA_Achr11P...	Banana	cytosol	14.6	7.23
GSMUA_Achr1P01960_001	Banana	cytosol	12.62	6.51
GSMUA_Achr7P22550_001	Banana	cytosol	1.49	4.72
GSMUA_Achr8P00540_001	Banana	endoplasmic reticulum, extracellular, plasma membrane	0.74	1.17

Protein Annotations

MapMan:22.3.4.2	Gene3D:3.30.40.160	InterPro:ARFGAP/RecO	InterPro:ArfGAP_dom	InterPro:ArfGAP_dom_sf	GO:GO:0003674
GO:GO:0005096	GO:GO:0005488	GO:GO:0008150	GO:GO:0030234	GO:GO:0043547	GO:GO:0046872
EnsemblPlantsGene:GSMUA_Achr4G28870_001	EnsemblPlants:GSMUA_Achr4P28870_001	EnsemblPlants:GSMUA_Achr4T28870_001	InterPro:IPR001164	InterPro:IPR038508	UniProt:M0SSZ9
PFAM:PF01412	PRINTS:PR00405	PFscan:PS50115	PANTHER:PTHR23180	PANTHER:PTHR23180:SF381	SMART:SM00105
SUPFAM:SSF57863	UniParc:UPI0002956D53	SEG:seg	:	:	:

Description

Probable ADP-ribosylation factor GTPase-activating protein AGD8 [Source:GMGC_GENE;Acc:GSMUA_Achr4G28870_001]

Coordinates

chr4:+:27095635..27101711

Molecular Weight (calculated)

44003.3 Da

IEP (calculated)

8.584

GRAVY (calculated)

-0.584

Length

404 amino acids

Sequence
(BLAST)

001: MASESVADRN AVFRKLKSKS ENKMCFDCNA KNPTWASVTY GIFLCIDCSA VHRSLGVHVS FVRSTNLDSW TPEQLKVMVF GGNNRAQVFF KQHGWTDGGK
101: IEAKYTSRAA ELYRQILSKE VAKSFAEDNV LPSSPVATSH TSDAVDRLPE LKVADATKEI SNERHEPEIR HSPKAPIHST VLSSIRKSTG AKKTGGKTGG
201: LGIRKLTTKP NENLYDQKPE QPAPTATTSD NFKTTDGPSY PSRFQYMDDI PIESGSGGAQ VISHVAPPKS SSFFAEFGMD SGFQKKSSST SSKVEESNEA
301: RQKFSNAKSI SSSQFFGDEK KSTENEAQMS LQKFTDSKAI SSADLFGHDT SDPGLDLTAA DLINRISFQA SQDISSLKNI AGETGKKLTS LASSLINDLQ
401: DRIL

Best Arabidopsis Sequence Match ( AT4G17890.1 )
(BLAST)

001: MASSSADNLT DKNIVFRKLK SKSENKVCFD CSAKNPTWAS VTYGIFLCID CSATHRNLGV HISFVRSTNL DSWSPEQLRT MMFGGNNRAQ VFFKQHGWTD
101: GGKIEAKYTS RAADLYRQIL AKEVAKAIAE ETNSGLLSSP VATSQLPEVS NGVSSYSVKE ELPLSKHEAT SATSSPKASN TVVPSTFKKP IGAKRTGKTG
201: GLGARKLTTK PKDNLYEQKP EEVAPVIPAV SSTNNGESKS SAGSSFASRF EYNDDLQSGG QSVGGTQVLN HVAPPKSSSF FSDFGMDSSF PKKSSSNSSK
301: SQVEESDEAR KKFTNAKSIS SAQYFGDQNK NADLESKATL QKFAGSASIS SADFYGHDQD DSNIDITASD LINRLSFQAQ QDLSSLVNIA GETKKKLGTL
401: ASGIFSDIQD RML

Arabidopsis Description

AGD8Probable ADP-ribosylation factor GTPase-activating protein AGD8 [Source:UniProtKB/Swiss-Prot;Acc:Q8H100]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.