Factsheet for GSMUA_Achr4P23780_001

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 3
plasma membrane 1
cytosol 2
golgi 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY71222	Canola	cytosol	17.44	86.46
GSMUA_Achr1P08800_001	Banana	cytosol	58.61	58.37
Os07t0563800-02	Rice	cytosol	55.25	55.25
EER99548	Sorghum	cytosol	53.78	54.12
TraesCS2D01G212100.1	Wheat	cytosol	53.36	53.47
TraesCS2A01G203600.1	Wheat	cytosol	53.36	53.47
TraesCS2B01G230900.1	Wheat	cytosol	52.94	53.05
GSMUA_Achr8P07470_001	Banana	cytosol	50.63	51.17
Zm00001d021802_P001	Maize	cytosol	51.05	50.73
Zm00001d006602_P001	Maize	cytosol	52.1	50.0
GSMUA_Achr11P...	Banana	cytosol, endoplasmic reticulum, nucleus	47.27	47.27
GSMUA_Achr5P26280_001	Banana	cytosol	45.38	45.76
GSMUA_Achr11P...	Banana	cytosol	16.39	19.4
GSMUA_Achr2P18150_001	Banana	cytosol	16.18	19.06
GSMUA_Achr4P21720_001	Banana	cytosol	15.97	18.72
GSMUA_AchrUn_...	Banana	mitochondrion	16.6	18.63
GSMUA_Achr10P...	Banana	mitochondrion	15.34	18.39
GSMUA_Achr4P28870_001	Banana	cytosol	15.13	17.82
GSMUA_Achr7P10440_001	Banana	cytosol, plastid	14.71	17.68
GSMUA_Achr7P15230_001	Banana	cytosol	16.18	17.62
GSMUA_Achr9P04020_001	Banana	mitochondrion	17.44	17.26
GSMUA_Achr5P28610_001	Banana	endoplasmic reticulum, vacuole	16.18	16.92
GSMUA_Achr8P00550_001	Banana	cytosol	15.13	12.79
GSMUA_Achr7P22530_001	Banana	endoplasmic reticulum	17.23	11.08
GSMUA_Achr11P...	Banana	cytosol	17.44	10.17
GSMUA_Achr4P00060_001	Banana	cytosol	17.65	10.04
GSMUA_Achr1P01960_001	Banana	cytosol	15.55	9.45
GSMUA_Achr7P22550_001	Banana	cytosol	2.1	7.87
GSMUA_Achr8P00540_001	Banana	endoplasmic reticulum, extracellular, plasma membrane	1.89	3.5

Protein Annotations

MapMan:22.3.4.2	Gene3D:3.30.40.160	InterPro:ARFGAP/RecO	InterPro:ArfGAP_dom	InterPro:ArfGAP_dom_sf	GO:GO:0003674
GO:GO:0005096	GO:GO:0005488	GO:GO:0008150	GO:GO:0030234	GO:GO:0043547	GO:GO:0046872
EnsemblPlantsGene:GSMUA_Achr4G23780_001	EnsemblPlants:GSMUA_Achr4P23780_001	EnsemblPlants:GSMUA_Achr4T23780_001	InterPro:IPR001164	InterPro:IPR038508	UniProt:M0SRI9
PFAM:PF01412	PRINTS:PR00405	PFscan:PS50115	PANTHER:PTHR23180	PANTHER:PTHR23180:SF160	SMART:SM00105
SUPFAM:SSF57863	UniParc:UPI000294A3A1	SEG:seg	:	:	:

Description

Putative Probable ADP-ribosylation factor GTPase-activating protein AGD5 [Source:GMGC_GENE;Acc:GSMUA_Achr4G23780_001]

Coordinates

chr4:+:23769329..23776904

Molecular Weight (calculated)

51788.7 Da

IEP (calculated)

8.364

GRAVY (calculated)

-0.594

Length

476 amino acids

Sequence
(BLAST)

001: MNEKASVSKE LNAKHKKILE GLMKLPENRE CADCKTKGPR WASVNLGIFI CMQCSGIHRS LGVHISKVRS ATLDTWLPEQ VTFIQTMGNE KSNSYWEAEL
101: PPNYDRVGIE NFIRAKYEDK RWIPRHGSSR SPSRAPEEIT SEFQQRHNGT VGCKFTNNLN SVEEQRKPSQ LNAMKNNPVA PEVPSQVSSV TKGEAIMHKT
201: DSSQSPAQSK ADVPHKVDTP APPPKVDYVS DLFHMLTVET PSENSLESSS KDDNSWAGFQ SAEVTTAADQ KCSTKPVENP SQSISGIEDL FKDSPPLMVS
301: SSSVKSQASI KNDIMSLFEK SNMVSPYSVH QQQLAFLSQQ QALLMAVAKS GTVNPTLSGS SNQPAVTGLH APNINVLYQN WPNIGYQAPG VTPPDGQKGF
401: NNFSQLGNLM QGHPSGNYSH IHTSGMYSRG SPSVINGAAT SGTSKAVASP ASVVTSNKSA KEYDFSSLTH GMLPKH

Best Arabidopsis Sequence Match ( AT5G54310.1 )
(BLAST)

001: MNEKANVSKE LNARHRKILE GLLKHPENRE CADCKTKGPR WASVNLGIFI CMQCSGIHRS LGVHISKVRS ATLDTWLPEQ VAFIQSMGND KANSYWEAEL
101: PPNYDRVGIE NFIRAKYEEK RWVSRGEKAR SPPRVEQERR KSVERSGPGY EHGHSSSPVN LFEERKTIPA SRTRNNVAAT RINLPVPPQG PSQVIKPQQK
201: MESAATPVER EKQAVNVAPA SDPPKVDFAT DLFNMLSMDD STTNTSEATP GDTPADDNSW AGFQSAGSGQ TAEKIVTAKP AESSSPPASS SDFEDLFKDT
301: PNLTTQQAPK DVKGDIMSLF EKTNIVSPFA MHQQQVAMLA QQQALYMAAA KAAGGTPNGV NQQAIANALN VASANWSNPG GYQIPGMTNP VGGQADLQKL
401: MQNMNMNANM NTRPAQPQEN TLQYPSSSFY TMGQANQVNG MTPNSTGKPQ SSSATQPTST TPSSQSGKDF DFSSLMDGMF TKH

Arabidopsis Description

AGD5Nevershed [Source:UniProtKB/TrEMBL;Acc:C4NZX2]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.