Factsheet for GSMUA_Achr4P21720_001

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 3
cytosol 3
golgi 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
GSMUA_Achr4P28870_001	Banana	cytosol	81.53	81.93
GSMUA_Achr11P...	Banana	cytosol	72.91	73.63
GSMUA_Achr2P18150_001	Banana	cytosol	72.91	73.27
VIT_02s0012g01330.t01	Wine grape	cytosol	69.7	69.88
KRH45437	Soybean	endoplasmic reticulum, mitochondrion	67.98	68.49
KRH75607	Soybean	cytosol	67.49	67.99
Os03t0854100-01	Rice	cytosol	68.23	67.23
Zm00001d034885_P002	Maize	cytosol	68.72	67.07
EER90493	Sorghum	cytosol	68.47	66.83
Os10t0574800-01	Rice	plasma membrane	66.5	66.34
EER91883	Sorghum	cytosol	66.26	66.09
Zm00001d012827_P002	Maize	cytosol	68.23	65.8
Solyc08g005070.2.1	Tomato	cytosol	65.02	65.67
TraesCS1A01G193000.1	Wheat	cytosol	65.02	65.19
PGSC0003DMT400002955	Potato	cytosol	65.02	65.02
TraesCS5D01G554100.1	Wheat	cytosol, nucleus, peroxisome, plastid	66.26	64.98
TraesCS4A01G323700.1	Wheat	cytosol, nucleus, peroxisome, plastid	66.26	64.98
TraesCS1D01G196700.1	Wheat	cytosol	64.53	64.69
Bra013265.1-P	Field mustard	cytosol	61.82	63.71
Solyc08g076920.2.1	Tomato	nucleus	64.29	63.35
CDX78809	Canola	cytosol	60.84	63.17
CDX90439	Canola	cytosol	63.79	63.17
CDY44506	Canola	cytosol	61.58	63.13
CDY58500	Canola	cytosol	62.32	63.09
CDY01499	Canola	cytosol	63.05	62.9
PGSC0003DMT400045159	Potato	cytosol	63.79	62.86
CDX77687	Canola	cytosol	62.07	62.69
AT4G17890.1	Thale cress	cytosol	63.3	62.23
AT5G46750.1	Thale cress	cytosol	61.33	61.94
Bra024999.1-P	Field mustard	cytosol	55.66	61.92
Zm00001d047020_P002	Maize	cytosol	66.01	60.91
CDY59045	Canola	cytosol	58.87	60.81
AT2G35210.1	Thale cress	cytosol	59.11	60.76
Bra017330.1-P	Field mustard	cytosol	58.13	59.9
TraesCS5B01G554600.1	Wheat	cytosol, plastid	66.01	58.01
TraesCS1B01G207900.1	Wheat	mitochondrion, plastid	64.29	55.41
Zm00001d030031_P002	Maize	plastid	65.52	55.07
HORVU5Hr1G123590.1	Barley	cytosol	65.02	54.21
HORVU1Hr1G047800.23	Barley	plastid	21.67	26.04
Bra012634.1-P	Field mustard	cytosol	64.04	25.42
GSMUA_Achr10P...	Banana	mitochondrion	18.97	19.4
GSMUA_AchrUn_...	Banana	mitochondrion	19.95	19.1
GSMUA_Achr7P10440_001	Banana	cytosol, plastid	17.98	18.43
GSMUA_Achr5P28610_001	Banana	endoplasmic reticulum, vacuole	20.44	18.24
GSMUA_Achr7P15230_001	Banana	cytosol	19.21	17.85
GSMUA_Achr9P04020_001	Banana	mitochondrion	20.69	17.46
GSMUA_Achr1P08800_001	Banana	cytosol	19.95	16.95
GSMUA_Achr4P23780_001	Banana	cytosol	18.72	15.97
GSMUA_Achr8P07470_001	Banana	cytosol	16.75	14.44
GSMUA_Achr11P...	Banana	cytosol, endoplasmic reticulum, nucleus	16.5	14.08
GSMUA_Achr5P26280_001	Banana	cytosol	16.26	13.98
GSMUA_Achr8P00550_001	Banana	cytosol	12.56	9.06
GSMUA_Achr7P22530_001	Banana	endoplasmic reticulum	13.79	7.57
GSMUA_Achr11P...	Banana	cytosol	14.78	7.35
GSMUA_Achr4P00060_001	Banana	cytosol	15.02	7.29
GSMUA_Achr1P01960_001	Banana	cytosol	13.05	6.77
GSMUA_Achr7P22550_001	Banana	cytosol	1.48	4.72
GSMUA_Achr8P00540_001	Banana	endoplasmic reticulum, extracellular, plasma membrane	1.23	1.95

Protein Annotations

MapMan:22.3.4.2	Gene3D:3.30.40.160	InterPro:ARFGAP/RecO	InterPro:ArfGAP_dom	InterPro:ArfGAP_dom_sf	GO:GO:0003674
GO:GO:0005096	GO:GO:0005488	GO:GO:0008150	GO:GO:0030234	GO:GO:0043547	GO:GO:0046872
EnsemblPlantsGene:GSMUA_Achr4G21720_001	EnsemblPlants:GSMUA_Achr4P21720_001	EnsemblPlants:GSMUA_Achr4T21720_001	InterPro:IPR001164	InterPro:IPR038508	UniProt:M0SQY5
PFAM:PF01412	PRINTS:PR00405	PFscan:PS50115	PANTHER:PTHR23180	PANTHER:PTHR23180:SF381	SMART:SM00105
SUPFAM:SSF57863	UniParc:UPI000296D1A9	SEG:seg	:	:	:

Description

Probable ADP-ribosylation factor GTPase-activating protein AGD8 [Source:GMGC_GENE;Acc:GSMUA_Achr4G21720_001]

Coordinates

chr4:-:22126369..22133044

Molecular Weight (calculated)

43956.4 Da

IEP (calculated)

9.027

GRAVY (calculated)

-0.575

Length

406 amino acids

Sequence
(BLAST)

001: MASENHTDKN AVFKKLKSKS ENKMCFDCNA KNPTWSSVTY GIFLCIDCSA VHRSLGVHIS FVRSTNLDSW SPEQLKMMVF GGNNRAQVFF KQHGWTDGGK
101: IETKYTSRAA ELYRQILSKE VAKSSAEDSL LPSLPVAASH SSDAVSGIPE LKFADAPKEI SNGKHEPETT HSPKAHTHST LLSSARKPIG ARKTTGKTGG
201: LGIRKLTTKP NESLYDQKPE EPAPSVTSLA NSKTPGGPYY PSRFEYVETN PMESSSGGAQ LISHIAPPKS SSFFAEYGID NGFQKKSSSS SSKVQVQESN
301: EARQKFSNAK SISSTQFFGN PDKATDNEAH MSLQKFTGSK AISSADLFGH DVGDSGLDLT AADLINRISF QASQDMPSLK DIAGETGKKL TTLASSLIND
401: LQDRIL

Best Arabidopsis Sequence Match ( AT4G17890.1 )
(BLAST)

001: MASSSADNLT DKNIVFRKLK SKSENKVCFD CSAKNPTWAS VTYGIFLCID CSATHRNLGV HISFVRSTNL DSWSPEQLRT MMFGGNNRAQ VFFKQHGWTD
101: GGKIEAKYTS RAADLYRQIL AKEVAKAIAE ETNSGLLSSP VATSQLPEVS NGVSSYSVKE ELPLSKHEAT SATSSPKASN TVVPSTFKKP IGAKRTGKTG
201: GLGARKLTTK PKDNLYEQKP EEVAPVIPAV SSTNNGESKS SAGSSFASRF EYNDDLQSGG QSVGGTQVLN HVAPPKSSSF FSDFGMDSSF PKKSSSNSSK
301: SQVEESDEAR KKFTNAKSIS SAQYFGDQNK NADLESKATL QKFAGSASIS SADFYGHDQD DSNIDITASD LINRLSFQAQ QDLSSLVNIA GETKKKLGTL
401: ASGIFSDIQD RML

Arabidopsis Description

AGD8Probable ADP-ribosylation factor GTPase-activating protein AGD8 [Source:UniProtKB/Swiss-Prot;Acc:Q8H100]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.