Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- nucleus 2
- cytosol 2
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDY59045 | Canola | cytosol | 82.53 | 82.95 |
| Bra017330.1-P | Field mustard | cytosol | 81.77 | 81.98 |
| VIT_02s0012g01330.t01 | Wine grape | cytosol | 66.58 | 64.94 |
| Solyc08g005070.2.1 | Tomato | cytosol | 65.82 | 64.68 |
| KRH45437 | Soybean | endoplasmic reticulum, mitochondrion | 65.57 | 64.27 |
| KRH75607 | Soybean | cytosol | 65.57 | 64.27 |
| PGSC0003DMT400002955 | Potato | cytosol | 65.82 | 64.04 |
| AT5G46750.1 | Thale cress | cytosol | 63.04 | 61.94 |
| Solyc08g076920.2.1 | Tomato | nucleus | 64.56 | 61.89 |
| PGSC0003DMT400045159 | Potato | cytosol | 63.54 | 60.92 |
| AT4G17890.1 | Thale cress | cytosol | 63.04 | 60.29 |
| GSMUA_Achr4P21720_001 | Banana | cytosol | 60.76 | 59.11 |
| GSMUA_Achr4P28870_001 | Banana | cytosol | 60.0 | 58.66 |
| GSMUA_Achr11P... | Banana | cytosol | 59.49 | 58.46 |
| GSMUA_Achr2P18150_001 | Banana | cytosol | 59.75 | 58.42 |
| Os10t0574800-01 | Rice | plasma membrane | 60.0 | 58.23 |
| EER91883 | Sorghum | cytosol | 59.49 | 57.74 |
| TraesCS1A01G193000.1 | Wheat | cytosol | 58.23 | 56.79 |
| TraesCS1D01G196700.1 | Wheat | cytosol | 57.97 | 56.54 |
| Os03t0854100-01 | Rice | cytosol | 58.73 | 56.31 |
| TraesCS4A01G323700.1 | Wheat | cytosol, nucleus, peroxisome, plastid | 58.23 | 55.56 |
| TraesCS5D01G554100.1 | Wheat | cytosol, nucleus, peroxisome, plastid | 58.23 | 55.56 |
| EER90493 | Sorghum | cytosol | 57.97 | 55.05 |
| Zm00001d012827_P002 | Maize | cytosol | 58.48 | 54.87 |
| Zm00001d034885_P002 | Maize | cytosol | 56.71 | 53.85 |
| Zm00001d047020_P002 | Maize | cytosol | 58.99 | 52.95 |
| TraesCS5B01G554600.1 | Wheat | cytosol, plastid | 58.48 | 50.0 |
| TraesCS1B01G207900.1 | Wheat | mitochondrion, plastid | 58.23 | 48.83 |
| Zm00001d030031_P002 | Maize | plastid | 58.99 | 48.24 |
| HORVU5Hr1G123590.1 | Barley | cytosol | 57.97 | 47.02 |
| HORVU1Hr1G047800.23 | Barley | plastid | 20.51 | 23.96 |
| AT3G17660.2 | Thale cress | nucleus | 13.67 | 21.95 |
| AT3G53710.2 | Thale cress | cytosol | 20.76 | 17.86 |
| AT2G37550.1 | Thale cress | mitochondrion | 20.25 | 17.54 |
| AT5G54310.1 | Thale cress | cytosol | 17.22 | 14.08 |
| AT1G10870.2 | Thale cress | cytosol | 13.42 | 6.79 |
| AT5G13300.1 | Thale cress | cytosol | 14.18 | 6.77 |
| AT1G60860.1 | Thale cress | cytosol | 13.16 | 6.7 |
| AT5G61980.1 | Thale cress | cytosol | 13.92 | 6.64 |
Protein Annotations
| MapMan:22.3.4.2 | Gene3D:3.30.40.160 | EntrezGene:818088 | UniProt:A0A178VQN0 | ProteinID:AAC61816.1 | ProteinID:AEC09080.1 |
| ProteinID:AEC09081.1 | EMBL:AK229368 | InterPro:ARFGAP/RecO | ArrayExpress:AT2G35210 | EnsemblPlantsGene:AT2G35210 | RefSeq:AT2G35210 |
| TAIR:AT2G35210 | RefSeq:AT2G35210-TAIR-G | EnsemblPlants:AT2G35210.1 | TAIR:AT2G35210.1 | EMBL:AY085599 | InterPro:ArfGAP_dom |
| InterPro:ArfGAP_dom_sf | Unigene:At.37696 | ncoils:Coil | GO:GO:0000003 | GO:GO:0003674 | GO:GO:0005096 |
| GO:GO:0005488 | GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 | GO:GO:0005737 | GO:GO:0005794 |
| GO:GO:0007275 | GO:GO:0008150 | GO:GO:0009555 | GO:GO:0009790 | GO:GO:0009791 | GO:GO:0009793 |
| GO:GO:0030234 | GO:GO:0043547 | GO:GO:0046872 | InterPro:IPR001164 | InterPro:IPR038508 | RefSeq:NP_565801.1 |
| RefSeq:NP_973603.1 | UniProt:O82171 | ProteinID:OAP08094.1 | PFAM:PF01412 | PO:PO:0000230 | PO:PO:0000293 |
| PO:PO:0001016 | PO:PO:0001017 | PO:PO:0007611 | PO:PO:0007616 | PO:PO:0009005 | PO:PO:0009030 |
| PO:PO:0009031 | PO:PO:0009032 | PO:PO:0009046 | PO:PO:0025022 | PO:PO:0025195 | PO:PO:0025281 |
| PRINTS:PR00405 | PFscan:PS50115 | PANTHER:PTHR23180 | PANTHER:PTHR23180:SF381 | Symbol:RPA | SMART:SM00105 |
| SUPFAM:SSF57863 | UniParc:UPI000009F0CD | SEG:seg | : | : | : |
Description
AGD10RPA [Source:UniProtKB/TrEMBL;Acc:A0A178VQN0]
Coordinates
chr2:+:14836062..14838151
Molecular Weight (calculated)
43099.6 Da
IEP (calculated)
9.571
GRAVY (calculated)
-0.602
Length
395 amino acids
Sequence
(BLAST)
(BLAST)
001: MASENLNDKI SVFKKLKAKS DNKICFDCNA KNPTWASVTY GIFLCIDCSA VHRSLGVHIS FVRSTNLDSW SSEQLKMMIY GGNNRAQVFF KQYGWSDGGK
101: TEAKYTSRAA DLYKQILAKE VAKSKAEEEL DLPPSPPDST QVPNGLSSIK TSEALKESNT LKQQEKPDVV PVSPRISRSV KKPLGAKKTG KTGGLGARKL
201: TTKSSGTLYD QKPEESVIIQ ATSPVSAKSA RSSFSSRFDY ADNVQNREDY MSPQVVSHVA PPKSSGFFEE ELEMNGGRFQ KKPITSSSKL QIQETDEARK
301: KFTNAKSISS AQYFGNDNNS ADLEAKSSLK KFSGSSAISS ADLFGDGDGD FPLDLTAGDL LNRLSLQAQQ DISSLKNMAE ETKKKLGSVA SSLWV
101: TEAKYTSRAA DLYKQILAKE VAKSKAEEEL DLPPSPPDST QVPNGLSSIK TSEALKESNT LKQQEKPDVV PVSPRISRSV KKPLGAKKTG KTGGLGARKL
201: TTKSSGTLYD QKPEESVIIQ ATSPVSAKSA RSSFSSRFDY ADNVQNREDY MSPQVVSHVA PPKSSGFFEE ELEMNGGRFQ KKPITSSSKL QIQETDEARK
301: KFTNAKSISS AQYFGNDNNS ADLEAKSSLK KFSGSSAISS ADLFGDGDGD FPLDLTAGDL LNRLSLQAQQ DISSLKNMAE ETKKKLGSVA SSLWV
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.