Factsheet for VIT_02s0012g01330.t01

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 3
cytosol 3
golgi 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH45437	Soybean	endoplasmic reticulum, mitochondrion	79.75	80.15
KRH75607	Soybean	cytosol	78.52	78.91
Solyc08g005070.2.1	Tomato	cytosol	73.83	74.38
PGSC0003DMT400002955	Potato	cytosol	73.83	73.65
Solyc08g076920.2.1	Tomato	nucleus	73.83	72.57
PGSC0003DMT400045159	Potato	cytosol	73.09	71.84
CDY01499	Canola	cytosol	71.11	70.76
CDX90439	Canola	cytosol	71.36	70.49
Bra013265.1-P	Field mustard	cytosol	67.9	69.8
GSMUA_Achr4P21720_001	Banana	cytosol	69.88	69.7
CDX78809	Canola	cytosol	66.67	69.05
GSMUA_Achr11P...	Banana	cytosol	68.4	68.91
GSMUA_Achr2P18150_001	Banana	cytosol	68.64	68.81
CDY44506	Canola	cytosol	67.16	68.69
AT4G17890.1	Thale cress	cytosol	69.88	68.52
GSMUA_Achr4P28870_001	Banana	cytosol	68.15	68.32
EER91883	Sorghum	cytosol	68.15	67.81
CDX77687	Canola	cytosol	66.91	67.41
Os10t0574800-01	Rice	plasma membrane	67.65	67.32
CDY58500	Canola	cytosol	66.17	66.83
TraesCS1A01G193000.1	Wheat	cytosol	66.67	66.67
AT2G35210.1	Thale cress	cytosol	64.94	66.58
TraesCS1D01G196700.1	Wheat	cytosol	66.42	66.42
AT5G46750.1	Thale cress	cytosol	65.93	66.42
Bra024999.1-P	Field mustard	cytosol	59.51	66.03
Os03t0854100-01	Rice	cytosol	66.67	65.53
EER90493	Sorghum	cytosol	67.16	65.38
CDY59045	Canola	cytosol	62.96	64.89
Zm00001d034885_P002	Maize	cytosol	66.17	64.42
Bra017330.1-P	Field mustard	cytosol	62.47	64.21
TraesCS5D01G554100.1	Wheat	cytosol, nucleus, peroxisome, plastid	64.94	63.53
Zm00001d012827_P002	Maize	cytosol	65.93	63.42
TraesCS4A01G323700.1	Wheat	cytosol, nucleus, peroxisome, plastid	64.69	63.28
Zm00001d047020_P002	Maize	cytosol	67.9	62.5
TraesCS5B01G554600.1	Wheat	cytosol, plastid	65.43	57.36
TraesCS1B01G207900.1	Wheat	mitochondrion, plastid	66.67	57.32
Zm00001d030031_P002	Maize	plastid	67.9	56.94
HORVU5Hr1G123590.1	Barley	cytosol	64.2	53.39
Bra012634.1-P	Field mustard	cytosol	71.6	28.35
HORVU1Hr1G047800.23	Barley	plastid	21.48	25.74
VIT_17s0053g00430.t01	Wine grape	cytosol	13.58	21.32
VIT_08s0007g00010.t01	Wine grape	mitochondrion	23.95	20.86
VIT_00s0250g00050.t01	Wine grape	plastid	21.23	20.05
VIT_19s0014g03510.t01	Wine grape	cytosol	20.74	17.57
VIT_00s0404g00040.t01	Wine grape	cytosol	19.26	15.38
VIT_01s0150g00030.t01	Wine grape	cytosol	16.54	8.05
VIT_17s0000g00310.t01	Wine grape	cytosol	15.56	7.62
VIT_01s0010g01480.t01	Wine grape	endoplasmic reticulum, extracellular	8.89	5.03

Protein Annotations

EntrezGene:100252326	wikigene:100252326	MapMan:22.3.4.2	Gene3D:3.30.40.160	InterPro:ARFGAP/RecO	InterPro:ArfGAP_dom
InterPro:ArfGAP_dom_sf	ProteinID:CBI33882	ProteinID:CBI33882.3	UniProt:D7TTW7	EMBL:FN596247	GO:GO:0003674
GO:GO:0005096	GO:GO:0005488	GO:GO:0008150	GO:GO:0030234	GO:GO:0043547	GO:GO:0046872
InterPro:IPR001164	InterPro:IPR038508	EntrezGene:LOC100252326	wikigene:LOC100252326	PFAM:PF01412	PRINTS:PR00405
PFscan:PS50115	PANTHER:PTHR23180	PANTHER:PTHR23180:SF381	SMART:SM00105	SUPFAM:SSF57863	TIGR:TC58246
UniParc:UPI00015C8EFB	ArrayExpress:VIT_02s0012g01330	EnsemblPlantsGene:VIT_02s0012g01330	EnsemblPlants:VIT_02s0012g01330.t01	RefSeq:XP_002278066	RefSeq:XP_002278066.2
SEG:seg	:	:	:	:	:

Description

No Description!

Coordinates

chr2:+:7471782..7480458

Molecular Weight (calculated)

43516.6 Da

IEP (calculated)

9.031

GRAVY (calculated)

-0.539

Length

405 amino acids

Sequence
(BLAST)

001: MASEGFTDKN AVFRKLKAKS DNKMCFDCNA KNPTWASVTY GIFLCIDCSA VHRSLGVHIS FVRSTNLDSW SAEQLKMMSF GGNNRAQAFF KQHGWSDGGK
101: IEAKYTSRAA ELYRQLLSKE VAKSVAEDAG LPSSPVASQS AQATNGLADF KINEAPKESS LGKQEASDVP VSPKAPHTVM SSSVKKPIGA KRTGKSSGLG
201: ARKLTTKPSE NLYEQKPEEP SVPVSTSTNN TPSVGSSFAS RFEYIENVQS SEMNSGGTHV LSHVSPPKSS SFFAEYGMDS GFQKKASSNS SKVQIEESDE
301: ARRKFSNAKS ISSAQYFGDP SKANDMDSQV SLQKFSGSTA ISSADLFGHS SDNSPLDVSA SDLINRLSFQ AQQDYSSLKS IAGETGKKLS SLASTLMTDL
401: QDRIL

Best Arabidopsis Sequence Match ( AT4G17890.1 )
(BLAST)

001: MASSSADNLT DKNIVFRKLK SKSENKVCFD CSAKNPTWAS VTYGIFLCID CSATHRNLGV HISFVRSTNL DSWSPEQLRT MMFGGNNRAQ VFFKQHGWTD
101: GGKIEAKYTS RAADLYRQIL AKEVAKAIAE ETNSGLLSSP VATSQLPEVS NGVSSYSVKE ELPLSKHEAT SATSSPKASN TVVPSTFKKP IGAKRTGKTG
201: GLGARKLTTK PKDNLYEQKP EEVAPVIPAV SSTNNGESKS SAGSSFASRF EYNDDLQSGG QSVGGTQVLN HVAPPKSSSF FSDFGMDSSF PKKSSSNSSK
301: SQVEESDEAR KKFTNAKSIS SAQYFGDQNK NADLESKATL QKFAGSASIS SADFYGHDQD DSNIDITASD LINRLSFQAQ QDLSSLVNIA GETKKKLGTL
401: ASGIFSDIQD RML

Arabidopsis Description

AGD8Probable ADP-ribosylation factor GTPase-activating protein AGD8 [Source:UniProtKB/Swiss-Prot;Acc:Q8H100]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.