Factsheet for VIT_00s0404g00040.t01

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 3
plasma membrane 1
cytosol 2
golgi 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY71222	Canola	cytosol	16.17	85.42
VIT_19s0014g03510.t01	Wine grape	cytosol	57.79	61.3
EER99548	Sorghum	cytosol	47.34	50.74
VIT_17s0053g00430.t01	Wine grape	cytosol	25.64	50.39
Os07t0563800-02	Rice	cytosol	47.14	50.21
GSMUA_Achr8P07470_001	Banana	cytosol	46.35	49.89
TraesCS2D01G212100.1	Wheat	cytosol	45.76	48.84
Zm00001d021802_P001	Maize	cytosol	45.96	48.64
TraesCS2B01G230900.1	Wheat	cytosol	45.56	48.63
TraesCS2A01G203600.1	Wheat	cytosol	45.17	48.21
Zm00001d006602_P001	Maize	cytosol	47.14	48.19
GSMUA_Achr11P...	Banana	cytosol, endoplasmic reticulum, nucleus	41.62	44.33
GSMUA_Achr5P26280_001	Banana	cytosol	41.03	44.07
PGSC0003DMT400012918	Potato	cytosol	37.67	41.08
Solyc03g006610.2.1	Tomato	cytosol	37.28	40.56
VIT_02s0012g01330.t01	Wine grape	cytosol	15.38	19.26
VIT_08s0007g00010.t01	Wine grape	mitochondrion	16.37	17.85
VIT_00s0250g00050.t01	Wine grape	plastid	13.02	15.38
VIT_17s0000g00310.t01	Wine grape	cytosol	16.37	10.04
VIT_01s0150g00030.t01	Wine grape	cytosol	14.99	9.13
VIT_01s0010g01480.t01	Wine grape	endoplasmic reticulum, extracellular	9.07	6.42

Protein Annotations

EntrezGene:100854573	wikigene:100854573	MapMan:22.3.4.2	Gene3D:3.30.40.160	InterPro:ARFGAP/RecO	InterPro:ArfGAP_dom
InterPro:ArfGAP_dom_sf	ProteinID:CBI23473	ProteinID:CBI23473.3	UniProt:E0CW29	EMBL:FN595272	GO:GO:0003674
GO:GO:0005096	GO:GO:0005488	GO:GO:0008150	GO:GO:0030234	GO:GO:0043547	GO:GO:0046872
InterPro:IPR001164	InterPro:IPR038508	EntrezGene:LOC100854573	wikigene:LOC100854573	PFAM:PF01412	PRINTS:PR00405
PFscan:PS50115	PANTHER:PTHR23180	PANTHER:PTHR23180:SF160	SMART:SM00105	SUPFAM:SSF57863	UniParc:UPI0001BE1F37
ArrayExpress:VIT_00s0404g00040	EnsemblPlantsGene:VIT_00s0404g00040	EnsemblPlants:VIT_00s0404g00040.t01	RefSeq:XP_003635314	RefSeq:XP_003635314.1	RefSeq:XP_010646967.1
SEG:seg	:	:	:	:	:

Description

No Description!

Coordinates

chrUn:+:27697387..27712321

Molecular Weight (calculated)

55183.1 Da

IEP (calculated)

9.950

GRAVY (calculated)

-0.632

Length

507 amino acids

Sequence
(BLAST)

001: MNDKASVSKE LNARHRKILE GLLKLPENRE CADCKSKAPR WASVNLGIFI CMQCSGIHRS LGVHISKVRS ATLDTWLPDQ VAFIQSMGNE KSNSYWEAEL
101: PPNYDRVGIE NFIRAKYEEK RWVPRDGKAI SHSRESQQKA SAYRPRPGGS GAHRYTNNVE HSSDKKNIHP PNTNSSIPAS KSRIPAASKV SKQTTPDPQP
201: QENVQKSESS ISKAEPVKQA ATATPIVSPP RVDYATDLFR MLSVKDSREN DSEISAANGV STGFQSAEAS STVEKSTPSN PVESNIQSKT GIEDLFKDLT
301: LVTPPILEKP QKDMKNDIMN LFEKSSMVSP FSIHQQQVAM LAQQQSFLMA AAARSNGSHT FSGSIHQPGT NGVHLSTQNW GNIGHQRPGV LTPVTEPQKH
401: MQMGNIRPTH WSGTNVPLPT HSLGTNGPLP AHSSGTNVPL PARSLGTNVP CPTSSMYNMS PAHPINGVTM TGAGRLPSAL PNSSVILPKS GNDYDFSSLT
501: QGMFTKR

Best Arabidopsis Sequence Match ( AT5G54310.1 )
(BLAST)

001: MNEKANVSKE LNARHRKILE GLLKHPENRE CADCKTKGPR WASVNLGIFI CMQCSGIHRS LGVHISKVRS ATLDTWLPEQ VAFIQSMGND KANSYWEAEL
101: PPNYDRVGIE NFIRAKYEEK RWVSRGEKAR SPPRVEQERR KSVERSGPGY EHGHSSSPVN LFEERKTIPA SRTRNNVAAT RINLPVPPQG PSQVIKPQQK
201: MESAATPVER EKQAVNVAPA SDPPKVDFAT DLFNMLSMDD STTNTSEATP GDTPADDNSW AGFQSAGSGQ TAEKIVTAKP AESSSPPASS SDFEDLFKDT
301: PNLTTQQAPK DVKGDIMSLF EKTNIVSPFA MHQQQVAMLA QQQALYMAAA KAAGGTPNGV NQQAIANALN VASANWSNPG GYQIPGMTNP VGGQADLQKL
401: MQNMNMNANM NTRPAQPQEN TLQYPSSSFY TMGQANQVNG MTPNSTGKPQ SSSATQPTST TPSSQSGKDF DFSSLMDGMF TKH

Arabidopsis Description

AGD5Nevershed [Source:UniProtKB/TrEMBL;Acc:C4NZX2]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.