CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 3
plasma membrane 1
cytosol 2
golgi 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Zm00001d021802_P001	Maize	cytosol	90.91	89.77
Zm00001d006602_P001	Maize	cytosol	93.02	88.71
CDY71222	Canola	cytosol	16.91	83.33
Os07t0563800-02	Rice	cytosol	82.03	81.51
TraesCS2A01G203600.1	Wheat	cytosol	77.38	77.05
TraesCS2D01G212100.1	Wheat	cytosol	77.38	77.05
TraesCS2B01G230900.1	Wheat	cytosol	76.96	76.63
GSMUA_Achr4P23780_001	Banana	cytosol	54.12	53.78
GSMUA_Achr1P08800_001	Banana	cytosol	53.07	52.51
VIT_00s0404g00040.t01	Wine grape	cytosol	50.74	47.34
PGSC0003DMT400012918	Potato	cytosol	35.94	36.56
Solyc03g006610.2.1	Tomato	cytosol	35.94	36.48
EER90493	Sorghum	cytosol	17.76	20.19
EER91883	Sorghum	cytosol	16.7	19.41
EER92462	Sorghum	mitochondrion	17.55	18.16
OQU80812	Sorghum	cytosol	20.51	11.77
EER99172	Sorghum	cytosol	20.51	11.6
OQU85359	Sorghum	cytosol, mitochondrion, plastid	17.97	10.13

Protein Annotations

MapMan:22.3.4.2	Gene3D:3.30.40.160	EntrezGene:8081755	InterPro:ARFGAP/RecO	InterPro:ArfGAP_dom	InterPro:ArfGAP_dom_sf
UniProt:C5XBL1	EnsemblPlants:EER99548	ProteinID:EER99548	ProteinID:EER99548.1	GO:GO:0003674	GO:GO:0005096
GO:GO:0005488	GO:GO:0008150	GO:GO:0030234	GO:GO:0043547	GO:GO:0046872	InterPro:IPR001164
InterPro:IPR038508	PFAM:PF01412	PRINTS:PR00405	PFscan:PS50115	PANTHER:PTHR23180	PANTHER:PTHR23180:SF160
SMART:SM00105	EnsemblPlantsGene:SORBI_3002G340100	SUPFAM:SSF57863	unigene:Sbi.14118	UniParc:UPI0001A84233	RefSeq:XP_002463027.1
SEG:seg	:	:	:	:	:

Description

hypothetical protein

Coordinates

chr2:-:70717911..70722651

Molecular Weight (calculated)

50580.9 Da

IEP (calculated)

9.259

GRAVY (calculated)

-0.621

Length

473 amino acids

Sequence
(BLAST)

001: MNEKASVSKE LNAKHKKILE SLLRLPENRE CADCKSKGPR WASVNLGIFI CMTCSGIHRS LGVHISKVRS ATLDTWLPEQ VAFIQSMGNE KANSYWEAEL
101: PPNYDRVGIE NFIRAKYEDK RWVPRNGTSR PTSGVRDEKS QESLASANRS GHGHRSSFEQ NRVTALPSKV APVASRIPSQ ASPQPPKVEP PVPKVVSPPQ
201: PQKSPAKVEA TPPKVEKPSV APPPKVDYAT DLFNMLSMDG TTEKESESSS NDDNAWDGFQ SAQPVPSSEK KDSAKPAESK TQSTSGIEDL FKDSPALSIS
301: SAPAVSQVNA KNDIMSLFEK SNMVSPFAAH QQQLAFMSQQ QALLMAALKA GNAPQMIPGN ANQLNANGSN PPLGTLPFQN WTNLGYQNPG LTPAAAQNGA
401: TKVANNNQDF SSGTFGFGTP GVYNTSSAVP ANGATAAGAS NNGTASTASS NLPSQSGKDY DFSSLTQGFF TKR

Best Arabidopsis Sequence Match ( AT5G54310.1 )
(BLAST)

001: MNEKANVSKE LNARHRKILE GLLKHPENRE CADCKTKGPR WASVNLGIFI CMQCSGIHRS LGVHISKVRS ATLDTWLPEQ VAFIQSMGND KANSYWEAEL
101: PPNYDRVGIE NFIRAKYEEK RWVSRGEKAR SPPRVEQERR KSVERSGPGY EHGHSSSPVN LFEERKTIPA SRTRNNVAAT RINLPVPPQG PSQVIKPQQK
201: MESAATPVER EKQAVNVAPA SDPPKVDFAT DLFNMLSMDD STTNTSEATP GDTPADDNSW AGFQSAGSGQ TAEKIVTAKP AESSSPPASS SDFEDLFKDT
301: PNLTTQQAPK DVKGDIMSLF EKTNIVSPFA MHQQQVAMLA QQQALYMAAA KAAGGTPNGV NQQAIANALN VASANWSNPG GYQIPGMTNP VGGQADLQKL
401: MQNMNMNANM NTRPAQPQEN TLQYPSSSFY TMGQANQVNG MTPNSTGKPQ SSSATQPTST TPSSQSGKDF DFSSLMDGMF TKH

Arabidopsis Description

AGD5Nevershed [Source:UniProtKB/TrEMBL;Acc:C4NZX2]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.