CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion, plastid, cytosol

Predictor Summary:

nucleus 1
cytosol 1
mitochondrion 2
plastid 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol, mitochondrion, plastid
Any Predictor:	cytosol, mitochondrion, nucleus, plastid
BaCelLo:	nucleus
MultiLoc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	plastid
YLoc:	mitochondrion

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Os02t0632500-01	Rice	cytosol, plasma membrane	77.71	85.79
TraesCS6D01G213800.1	Wheat	cytosol	76.04	83.62
TraesCS6A01G221400.1	Wheat	cytosol	75.8	83.36
TraesCS6B01G259800.1	Wheat	cytosol	75.8	82.92
HORVU6Hr1G059210.10	Barley	cytosol, plastid	66.87	79.24
Zm00001d051187_P009	Maize	plastid	64.6	76.88
GSMUA_Achr1P01960_001	Banana	cytosol	58.88	63.09
KRH24228	Soybean	cytosol	52.2	56.44
KRH29237	Soybean	cytosol	52.2	56.44
CDY19326	Canola	cytosol	51.13	55.79
Solyc04g008660.2.1	Tomato	cytosol	51.85	55.7
Bra019896.1-P	Field mustard	cytosol	50.89	55.45
CDY40502	Canola	cytosol	50.42	55.44
CDX97917	Canola	cytosol	50.54	55.14
AT1G60860.1	Thale cress	cytosol	50.54	54.64
Bra027124.1-P	Field mustard	cytosol	49.11	54.14
CDY54764	Canola	cytosol	49.11	54.07
AT1G10870.2	Thale cress	cytosol	50.18	53.97
PGSC0003DMT400076862	Potato	cytosol	8.22	53.49
VIT_01s0010g01480.t01	Wine grape	endoplasmic reticulum, extracellular	41.12	48.18
PGSC0003DMT400008126	Potato	cytosol	11.32	44.39
OQU80812	Sorghum	cytosol	43.5	44.3
EER99172	Sorghum	cytosol	43.38	43.54
PGSC0003DMT400013119	Potato	cytosol	9.77	39.42
EER99548	Sorghum	cytosol	10.13	17.97
EER91883	Sorghum	cytosol	6.2	12.78
EER90493	Sorghum	cytosol	5.96	12.02
EER92462	Sorghum	mitochondrion	6.2	11.38

Protein Annotations

Gene3D:1.20.1270.60	MapMan:22.3.4.1	Gene3D:3.30.40.160	UniProt:A0A1Z5RP79	InterPro:AGD1/2/3/4_BAR_plant	InterPro:AH/BAR_dom_sf
InterPro:ARFGAP/RecO	InterPro:Ankyrin_rpt	InterPro:Ankyrin_rpt-contain_dom	InterPro:Ankyrin_rpt-contain_sf	InterPro:ArfGAP_dom	InterPro:ArfGAP_dom_sf
InterPro:BAR_dom	ncoils:Coil	GO:GO:0003674	GO:GO:0005096	GO:GO:0005488	GO:GO:0005515
GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005737	GO:GO:0008150	GO:GO:0030234
GO:GO:0043547	GO:GO:0046872	InterPro:IPR001164	InterPro:IPR001849	InterPro:IPR002110	InterPro:IPR004148
InterPro:IPR020683	InterPro:IPR027267	InterPro:IPR036770	InterPro:IPR038508	EnsemblPlants:OQU85359	ProteinID:OQU85359
ProteinID:OQU85359.1	PFAM:PF00169	PFAM:PF01412	PFAM:PF13857	PFAM:PF16746	InterPro:PH_domain
PRINTS:PR00405	PFscan:PS50003	PFscan:PS50088	PFscan:PS50115	PFscan:PS50297	PFscan:PS51021
PANTHER:PTHR23180	PANTHER:PTHR23180:SF244	SMART:SM00105	SMART:SM00233	SMART:SM00248	SMART:SM00721
EnsemblPlantsGene:SORBI_3004G223300	SUPFAM:SSF103657	SUPFAM:SSF48403	SUPFAM:SSF50729	SUPFAM:SSF57863	UniParc:UPI000B8BA258
SEG:seg	:	:	:	:	:

Description

hypothetical protein

Coordinates

chr4:+:57381899..57399265

Molecular Weight (calculated)

94015.9 Da

IEP (calculated)

6.906

GRAVY (calculated)

-0.398

Length

839 amino acids

Sequence
(BLAST)

001: MSTAHTCKPH IHRDPRTTIL HCAGLLAGKP DSYARPPPLW LSPPPSLPPS LLPPAQISTS FQRAAAASPS PPRDTRTDMA AFTKLEDSPM FRKQVNSLEQ
101: HTDELKERCS NLHKGCKRFM GSLDEAYAGD LSFADNLQAF GAGLDDPISV AIGGPVMSKF TTAFRELGTY KELLRSQVEH MLSDRLSQFI NVDLNGVKDC
201: RRRLDRAAVA YDQAREKFVS VRKGTRAEVV TELEEDLHNA KSAFERCRFN LVHALANIEA KKKYEFLESI SAVMDAHLRY FKQGYELLSQ MEPFIHQVLT
301: YAQQSKQMAV SEQDKLAKRI QEFRTEEEIA NVRMASNVDT STSGDGIHVV GLQSYKTIEA LMQSTANGEV QVIKQGYLFK RPQNTRGEWK RRFFVLDSHG
401: TLYYYGNKGK SQGVSSQQTA SEGAGVFGRF RFLNQRASSQ GEDSLSCHKI DLRTSTIKVD ADENDLRFCF RIISPVKTYT LQAESGADQK DWIQKITGVI
501: ASLLNSPFPQ QLSYGNVSAE SNRSASSVDS LSIEDNKSSE GHDDIFNLLR NIPGNDSCAE CRSPDPDWAS LNLGILICIE CSGAHRNLGV HISKVRSLRL
601: DVKVWEPVIM DLFHALGNNY ANSIWEALLP KEDQGMDESN GAILFIEKPK PNDAFSIKER YIQTKYVDKL LFARDPDQIT INIFEAIRKN DVREAYRILA
701: IAEVSANMTY DALSKDVHHV QPVTDKMLLD PISCEIIQDS GKPEGCLQGC SLLHFACQYG HPIMVELLLL FGADINMQDF HGRTPLHHCV QKKNDELTKH
801: LLKRGARTTI KDGGGLTALE RRMELGAITD EDLFILFVR

Best Arabidopsis Sequence Match ( AT1G60860.1 )
(BLAST)

001: MAGFINLEDS PMFQKQVFSL EGTSDELKDR CQKLYKGVKK FMGALGEAST GVSAFADSLE EFGAGHDDPV SVSIGGPVIS KFINTLRELS SYKEFLRSQV
101: EHVLLERLTN FMTVDLQEAK ESRRRFDKAV HSYDQAREKF VSLKKNTRGD IVAELEEDLE NSKSAFEKSR FNLVNSLMTI EAKKKYEFLE SISAIMDSHF
201: KYFKLGYDLL SQLEPYIHQV LTYAQQSKEQ SKIEQDRFAQ RIQEFRTQSE LDSQQASAKA DPSDVGGNHV YRAIPRKNVE ANSVSTADKE VTKQGYLLKR
301: SASLRADWKR RFFVLDNHGS LYYYRNTGNK SAKSQHYYSG LGEHSSGVFG RFRTRHNRSA SQGSLDCNMI DLRTSLIKLD AEDTDLRLCF RIISPQKTYT
401: LQAENGADRM DWVNKITAAI TIRLNSHFLQ QSPARYLDKK NTSSGPATEN LTLNQKEDYN QRLNVGDDVL TILREIPGNN TCAECNAPDP DWASLNLGVL
501: MCIECSGVHR NLGVHISKVR SLTLDVKVWE PTILDLFRNL GNGYCNSVWE ELLHHLDDDS EKGSTDTLAS VSKPSSEDWF TLKEKYINGK YLEKALVVKD
601: EREANSTASS RIWEAVQSRN IRDIYRLIVK ADANIINTKF DDITDLDVYH HHHVDAPDEV KKRHDPNACQ RIKNSNEARN CLQGCSLLHV ACQSGDPILL
701: ELLLQFGADI NMRDYHGRTP LHHCIASGNN AFAKVLLRRG ARPSIEDGGG LSVLERAMEM GAITDEELFL LLAECQ

Arabidopsis Description

AGD2ADP-ribosylation factor GTPase-activating protein AGD2 [Source:UniProtKB/Swiss-Prot;Acc:Q9C6C3]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.